Keywords: paralog processing, transcriptome, ascorbate, root development, deep learning, Arabidopsis thaliana

Latest 261 Papers

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Chloroplast- and Mitochondrion-Specific Random C-to-T Mutagenesis for Forward Genetics of Organelle Genomes

Authors: Kosaka, N., Harada, Y., Nakazato, I., Okuno, M., Itoh, T., Tsutsumi, N., Arimura, S.-i.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.01.685978

Model Organism: Arabidopsis thaliana

organellar base editing C-to-T mutagenesis plastid genome Arabidopsis thaliana spectinomycin resistance

Delineating Mutation Bias and Selection during Plant Development

Authors: Monroe, G., Lensink, M., Ahn, V., Davis, M. W., Oya, S., Zhao, K.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.01.686053

Model Organism: Arabidopsis thaliana

germline mutations purifying selection mutation bias Arabidopsis thaliana mutation-accumulation

Cross-dataset evaluation of deep learning models for plant pest and disease diagnosis

Authors: Sun, J.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2024.10.07.617111

Model Organism: Solanum lycopersicum

deep learning cross-dataset generalization tomato pest and disease dataset variability model architecture

The O-glycosyltransferase SECRET AGENT Participates in Abscisic Acid-Induced Microtubule Remodeling and Stomatal Closure in Arabidopsis thaliana

Authors: Sun, P., Wu, Y., Wang, P., Hu, M., Wang, Z., Yu, R., Li, J.

Date: 2025-10-31 · Version: 1

DOI: 10.1101/2025.10.29.683829

Model Organism: Arabidopsis thaliana

O-GlcNAc transferase ABA-induced stomatal closure microtubule dynamics drought tolerance Arabidopsis thaliana

Elevated methionine induces DNA hypermethylation of transposable elements in Arabidopsis

Authors: Yerushalmy, Y., Lieberman-Lazarovich, M., Amir, R., Hacham, Y.

Date: 2025-10-31 · Version: 1

DOI: 10.1101/2025.10.30.685479

Model Organism: Arabidopsis thaliana

Methionine metabolism S‑adenosylmethionine DNA hypermethylation Transposable element silencing Arabidopsis thaliana

Over-expression of Cyclic Nucleotide-Gated Ion Channel 2 (CNGC2) triggers 1 hypersensitivity to virulent pathogens and elevated Ca2+

Authors: Chakraborty, S., Lee, H., Nambara, E., Moeder, W., Yoshioka, K.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685368

Model Organism: Arabidopsis thaliana

CNGC2 Arabidopsis thaliana immune signaling calcium homeostasis flg22 response

HDA6 regulates chloroplast biogenesis and photosynthesis in Arabidopsis through deacetylation of non-histone proteins

Authors: Wang, H.

Date: 2025-10-29 · Version: 1

DOI: 10.1101/2025.10.28.685251

Model Organism: Arabidopsis thaliana

Histone deacetylase 6 (HDA6)chloroplast biogenesis thylakoid architecture Arabidopsis thaliana epigenetic regulation

Identification of dehydrin protein complexes in vivo reveals functional interactions of LEA5 with OSCA3, PIP2B and PLDα1 in plant water-deficit stress

Authors: Fabregas, N., Rivas, F. J. M., Hernandez-Sanchez, I. E., Lozano-Elena, F., Arabi, F., Sokolowska, E., Skirycz, A., Fernie, A. R.

Date: 2025-10-27 · Version: 1

DOI: 10.1101/2025.10.27.684818

Model Organism: Arabidopsis thaliana

LEA proteins dehydrin interactome salt stress Arabidopsis thaliana protein‑protein interaction

Time- and space-resolved regulatory circuits in Arabidopsis thaliana

Authors: Zenker, S., Schiller, K., Braeutigam, A.

Date: 2025-10-24 · Version: 1

DOI: 10.1101/2025.10.23.684094

Model Organism: Arabidopsis thaliana

intermediate regulatory proteins temporal expression dynamics Arabidopsis thaliana RNA sequencing circadian regulation

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