Keywords: paralog processing, transcriptome, metabarcoding, deep learning, transcriptomics, Arabidopsis thaliana

Latest 287 Papers

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

PUMILIOs and m6A-ECT2/ECT3 share mRNA targets and exert opposing control over organogenesis

Authors: Chen, J., Sanges Ametlle, M., Rennie, S., Arribas-Hernandez, L., Brodersen, P.

Date: 2025-10-12 · Version: 1

DOI: 10.1101/2025.10.11.681827

Model Organism: Arabidopsis thaliana

PUF proteins YTHDF m6A RNA methylation Arabidopsis thaliana growth regulation

CDM1 is required for meiotic progression and genome integrity during male meiosis in Arabidopsis

Authors: Davda, J. N., Nalli, A., Singh, D. K., Frank, K., Fernandes, J., Siddiqi, I.

Date: 2025-10-12 · Version: 1

DOI: 10.1101/2025.10.10.681646

Model Organism: Arabidopsis thaliana

CDM1 meiotic DNA damage response Arabidopsis thaliana chromosome condensation pre‑meiotic replication repair

Artificial Soil (ArtSoil): recreating soil conditions in synthetic plant growth media

Authors: Kaplunova, V., Alioui, H., Griguschies, T., Duran, P., Lautwein, T., Metzger, S., Loo, E.

Date: 2025-10-11 · Version: 1

DOI: 10.1101/2025.10.09.681539

Model Organism: Arabidopsis thaliana

Artificial Soil (ArtSoil)Arabidopsis thaliana soil microbiota sugar‑free plant growth single‑cell transcriptomics

Jasmonic Acid Oxidases (JAO) define a new branch in jasmonate metabolism towards 11OH-jasmonic acid and its glucosylated derivative

Authors: Heitz, T., Marquis, V., Zumsteg, J., Dannawi, D., Schutz, D., Miesch, L.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681447

Model Organism: Arabidopsis thaliana

jasmonates hydroxy‑JA isomers Jasmonic Acid Oxidases IAR3 and ILL6 amido hydrolases Arabidopsis thaliana

Delineating plant responses to the 3',5'- and 2',3'-cAMP isomers

Authors: Davide, E., Domingo, G., Di Iacovo, A., Marsoni, M., Yun, P., Gehring, C., Bossi, E., Shabala, S., Bracale, M., Vannini, C.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681331

Model Organism: Arabidopsis thaliana

cAMP isomers Arabidopsis thaliana comparative proteomics electrophysiology CNGC2/CNGC18 gating

Deciphering Photosynthetic Protein Networks: A Crosslinking-MS Strategy for Studying Functional Thylakoid Membranes

Authors: Frances, N., Giustini, C., Finazzi, G., Ferro, M., Albanese, P.

Date: 2025-10-08 · Version: 1

DOI: 10.1101/2025.10.07.681025

Model Organism: Multi-species

photosynthesis thylakoid membranes crosslinking mass spectrometry protein complexes Arabidopsis thaliana

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Model Organism: Pisum sativum

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

Ethylene-induced host responses enhance resistance against the root-parasitic plant Phelipanche aegyptiaca

Authors: Park, S., Yang, C., Westwood, J.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680554

Model Organism: Multi-species

Phelipanche aegyptiaca ethylene signaling host resistance parasitic weed Arabidopsis thaliana

(3R, 7S)-11-hydroxy-jasmonic acid is a major oxidative shunt product of jasmonate catabolism in Arabidopsis thaliana

Authors: Matumoto, K., Mitsui, M., Kaji, T., Gao, R., Kitaoka, N., Otaki, T., Nishizato, Y., Matsuura, H., Ueda, M.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.03.680387

Model Organism: Arabidopsis thaliana

jasmonic acid 11-hydroxy-JA JOX enzymes Arabidopsis thaliana JA catabolism

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