Keywords: paralog processing, transcriptome, metabarcoding, deep learning, transcriptomics, Arabidopsis thaliana

Latest 287 Papers

Sorghum embryos undergoing B chromosome elimination express B-variants of mitotic-related genes

Authors: Bojdova, T., Hlouskova, L., Holusova, K., Svacina, R., Hribova, E., Ilikova, I., Thiel, J., Kim, G., Pleskot, R., Houben, A., Bartos, J., Karafiatova, M.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679447

Model Organism: Sorghum purpureosericeum

DNA elimination B chromosome Sorghum purpureosericeum kinetochore proteins transcriptomics

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

Candidatus Phytoplasma-induced Retrogressive Morphogenesis in Sesame (Sesamum indicum L.): Tissue-Specific Metabolic and Transcriptomic Reprogramming

Authors: Banerjee, S., Gangopadhyay, G.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679221

Model Organism: Sesamum indicum

phytoplasma infection Sesamum indicum metabolomics transcriptomics tissue-specific response

Arabidopsis SWEET12 regulates sugar allocation and defense responses to sustain beneficial association with Serendipita indica in roots

Authors: Jogawat, A., Sanyasi, M., Menon, S. H., Goyal, D., Nair, A. M., Vadassery, J.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679152

Model Organism: Arabidopsis thaliana

SWEET12 Serendipita indica Arabidopsis thaliana mutualistic symbiosis sugar transport

CRISPR targeting of H3K4me3 activates gene expression and unlocks centromere-proximal crossover recombination in Arabidopsis

Authors: Binenbaum, J., Adamkova, V., Fryer, H., Xu, L., Gorringe, N., Wlodzimierz, P., Burns, R., Papikian, A., Jacobsen, S. E., Henderson, I., Harris, C. J.

Date: 2025-09-30 · Version: 2

DOI: 10.1101/2025.02.07.636860

Model Organism: Arabidopsis thaliana

H3K4me3 SunTag epigenome editing Arabidopsis thaliana disease resistance meiotic crossover

Evidence for rapid hydrolysis of shoot-derived sucrose using an ultrasensitive ratiometric Matryoshka-type MGlucoMeter sensor

Authors: Ishikawa, Y., Zoellner, N., Paradies, S., Frommer, W. B.

Date: 2025-09-29 · Version: 1

DOI: 10.1101/2025.09.27.678933

Model Organism: Arabidopsis thaliana

genetically encoded glucose sensor ratiometric nanosensor alanine scanning mutagenesis affinity mutant Arabidopsis thaliana

The Arabidopsis nucleoporins 98A/B are essential for NLP7 nuclear accumulation in response to nitrate

Authors: Kelemen, Z., Duville, G., Brehaut, V., Krapp, A.

Date: 2025-09-24 · Version: 1

DOI: 10.1101/2025.09.22.677877

Model Organism: Arabidopsis thaliana

NUP98 NLP7 nitrate signaling nucleocytoplasmic trafficking Arabidopsis thaliana

A nuclear pore complex component HOS1 mediates UV-B light-induced UVR8 nuclear localization for activating HY5 cascade in Arabidopsis

Authors: Han, S.-H., Ji, M. G., Kim, W.-Y., Park, C.-M., Jung, J.-H.

Date: 2025-09-23 · Version: 1

DOI: 10.1101/2025.09.22.677739

Model Organism: Arabidopsis thaliana

UVR8 HOS1 nuclear import UV-B signaling Arabidopsis thaliana

Cysteine-rich receptor-like kinases mediate Wall Teichoic Acid perception in Arabidopsis

Authors: Pierdzig, L., Seinsche, C., Kalla, S., Armiento, S., Schulz, L. M., Rismondo, J., Molinaro, A., De Castro, C., Petutschnig, E. K., Lipka, V.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.18.677107

Model Organism: Arabidopsis thaliana

wall teichoic acids MAMP CYSTEINE‑RICH RECEPTOR‑LIKE KINASE Arabidopsis thaliana salicylic acid signaling

Samplify: A versatile tool for image-based segmentation and annotation of seed abortion phenotypes

Authors: Bente, H., Müller, R. L. J., Donath, A., Walther, D., Köhler, C.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.18.677122

Model Organism: Arabidopsis thaliana

seed phenotyping Arabidopsis thaliana automated segmentation Random Forest classification triploid block

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