Keywords: paralog processing, transcriptome, metabarcoding, deep learning, transcriptomics, Arabidopsis thaliana

Latest 287 Papers

Multi-Omics Analysis of Heat Stress-Induced Memory in Arabidopsis

Authors: Thirumlaikumar, V. P. P., Yu, L., Arora, D., Mubeen, U., Wisniewski, A., Walther, D., Giavalisco, P., Alseekh, S., DL Nelson, A., Skirycz, A., Balazadeh, S.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.19.660594

Model Organism: Arabidopsis thaliana

heat stress acquired thermotolerance heat stress memory multi-omics Arabidopsis thaliana

Molecular Insights into the Production of Extracellular Vesicles by Plants

Authors: Koch, B. L., Gardner, D., Smith, H., Bracewell, R., Awdey, L., Foster, J., Borniego, M. L., Munch, D. H., Nielsen, M. E., Pasupuleti, R., Trinidad, J., Rutter, B., Thordal-Christensen, H., Innes, R. W.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.16.659989

Model Organism: Arabidopsis thaliana

extracellular vesicles Arabidopsis thaliana EXO70 exocyst complex proximity labeling plant immunity

The Ca2+ Channel CYCLIC NUCLEOTIDE GATED CHANNEL13 (CNGC13) regulates systemic wound signalling and immunity against Spodoptera herbivory

Authors: Prajapati, R., Kumari, M., Singh, Y., Pawar, M., Marchesano, B. M. O., Kalia, J., Costa, A., Vadassery, J.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.16.660006

Model Organism: Arabidopsis thaliana

CNGC13 systemic Ca2+ signaling jasmonate defense glucosinolate metabolism Arabidopsis thaliana

Analysis of protein aging reveals rates of subcellular organelle renewal and selective post-translational modification in Arabidopsis

Authors: Tivendale, N., Liu, X., Millar, A. H.

Date: 2025-06-12 · Version: 1

DOI: 10.1101/2025.06.09.658759

Model Organism: Arabidopsis thaliana

protein aging pulse‑chase BONCAT Arabidopsis thaliana mass spectrometry proteomics oxidative post‑translational modifications

Drought stress modulates the molecular response of Arabidopsis plants to root-knot nematode infection

Authors: Refaiy, A., Lilley, C. J., Atkinson, N. J., Urwin, P. E.

Date: 2025-06-09 · Version: 1

DOI: 10.1101/2025.06.05.658137

Model Organism: Arabidopsis thaliana

combined biotic and abiotic stress drought stress root‑knot nematode (Meloidogyne incognita)RNA‑Seq transcriptomics Arabidopsis thaliana

Salicylic acid accumulation correlates with low anthocyanin production in Arabidopsis

Authors: Drs, M., Iakovenko, O., Orozco, J. S. H., Trhlinova, P. B., Markovice, V., Zarsky, V., Pecenkova, T., Janda, M.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658514

Model Organism: Arabidopsis thaliana

salicylic acid anthocyanin biosynthesis Arabidopsis thaliana pattern‑triggered immunity anthocyanin vesicular inclusions

Cooperation between a root fungal endophyte and host-derived coumarin scopoletin mediates Arabidopsis iron nutrition

Authors: Van Dijck, L., Esposto, D., Huelsmann, C., Malisic, M., Piro, A., Giehl, R. F. H., Balcke, G. U., Tissier, A., Parker, J. E.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.04.657782

Model Organism: Arabidopsis thaliana

iron acquisition coumarins scopoletin Macrophomina phaseolina Arabidopsis thaliana

Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning

Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657584

Model Organism: Arabidopsis thaliana

Abscisic acid Arabidopsis thaliana deep learning promoter motifs ABF binding sites

Clade I TGA transcription factors are negative regulators of sulfate uptake and metabolism

Authors: Shukla, V., Basu, S., Koprivova, A., Ristova, D.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.06.658247

Model Organism: Arabidopsis thaliana

nitrate signaling sulfate uptake TGA transcription factors Arabidopsis thaliana pathogen interaction

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

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