Keywords: paralog processing, transcriptome, metabarcoding, deep learning, transcriptomics, Arabidopsis thaliana

Latest 287 Papers

Nuclear SnRK1 activity delays clubroot development in Arabidopsis by reducing sink strength

Authors: Vijayakumar, H., Guillaume, N., Vandesteene, L., Van Dijck, P., Van den Ende, W., De Coninck, B., Rolland, F.

Date: 2025-12-31 · Version: 1

DOI: 10.64898/2025.12.31.697172

Model Organism: Arabidopsis thaliana

SnRK1 clubroot Arabidopsis thaliana sucrose transporters cell wall invertase

Ubiquitin ligase PUB41 modulates root hair development in Arabidopsis via interaction with the auxin polar transporter PIN2

Authors: Sharma, A., Raveh, D., Bar-Zvi, D.

Date: 2025-12-25 · Version: 1

DOI: 10.64898/2025.12.25.696480

Model Organism: Arabidopsis thaliana

Root hair development Auxin signaling PUB41 ubiquitin ligase PIN2 auxin transporter Arabidopsis thaliana

Charge reversal at the Lhcb2 N-terminus impairs phosphorylation and PSI-LHCII complex formation

Authors: Srivastava, A., Schiphorst, C., Berentsen, J., Verhoeven, D., Leeuwen, J. v., Longoni, F., Saccon, F., Wientjes, E.

Date: 2025-12-25 · Version: 1

DOI: 10.64898/2025.12.25.696481

Model Organism: Arabidopsis thaliana

state transitions Lhcb2 N‑terminal charge phosphorylation Arabidopsis thaliana thylakoid ultrastructure

An ancient alkalinization factor informs Arabidopsis root development

Authors: Xhelilaj, K., von Arx, M., Biermann, D., Parvanov, A., Faiss, N., Monte, I., Klingelhuber, F., Zipfel, C., Timmermans, M., Oecking, C., Gronnier, J.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.22.695669

Model Organism: Arabidopsis thaliana

REMORIN proteins H⁺‑ATPase inhibition extracellular pH (pHe) alkalinization root development Arabidopsis thaliana

Manipulation of REMORIN gene dosage affects salt signaling and tolerance in Arabidopsis thaliana

Authors: von Arx, M., Roussinova, M., Bayer, E., Gronnier, J.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.22.695520

Model Organism: Arabidopsis thaliana

salinity stress REMORIN proteins plasma membrane nanodomains FORMIN 6 Arabidopsis thaliana

METABOLIC AND TRANSCRIPTOMIC ANALYSES IDENTIFY COORDINATED RESOURCE REALLOCATION IN RESPONSE TO PHOSPHATE SUPPLY IN HEMP

Authors: Wee Y, B., Berkowitz, O., Ng, S., Pegg, A., Whelan, J., Jost, R.

Date: 2025-12-23 · Version: 2

DOI: 10.1101/2025.09.18.677093

Model Organism: Cannabis sativa

Cannabis sativa phosphate nutrition transcriptomics source‑sink regulation nutrient signaling

The plant circadian clock exerts stronger control over the diel proteome than the transcriptome

Authors: Mehta, D., Talasila, M., Lau, Z. X., Rodriguez Gallo, M. C., Li, Q., Zhong, Y., Muzumdar, S., Li, R., Luo, W. J., Lau, V., Pasha, A., Lock, S., Ezer, D., Provart, N. J., Uhrig, R. G.

Date: 2025-12-22 · Version: 1

DOI: 10.64898/2025.12.19.695194

Model Organism: Arabidopsis thaliana

circadian clock proteome rhythmicity Arabidopsis thaliana post‑translational regulation LHY/CCA1

Robust division orientation of cambium stem cells requires cortical division zone components but not the preprophase band

Authors: Liu, X., Livanos, P., Schutz, L. S., Muller, S., Greb, T.

Date: 2025-12-20 · Version: 1

DOI: 10.64898/2025.12.18.695170

Model Organism: Arabidopsis thaliana

cell division plane orientation cambium stem cells Arabidopsis thaliana cortical division zone PHRAGMOPLAST ORIENTING KINESIN (POK)

Transcriptome and epigenome dynamics underpin cold stress priming in Arabidopsis

Authors: Sadykova, M., Saze, H.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.16.694799

Model Organism: Arabidopsis thaliana

stress priming DNA methylation cold stress Arabidopsis thaliana transcriptome dynamics

Root Hydraulic Conductivity and Transpiration in Arabidopsis: Coordination Revealed by a High-Stomatal-Density Mutant

Authors: Caceres, P. D., Manacorda, C. A., Sutka, M. R., asurmendi, s., Amodeo, G., Baroli, I.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.17.694893

Model Organism: Arabidopsis thaliana

stomatal density root hydraulic conductivity aquaporin expression osmotic stress Arabidopsis thaliana

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