Keywords: paralog processing, transcriptome, metabarcoding, deep learning, transcriptomics, Arabidopsis thaliana

Latest 287 Papers

The phytolongin AtPhyl2.1 is involved in cell plate formation and root development

Authors: Moreau, P., Wattelet-Boyer, V., Buridan, M., Negroni, Y. L., Mafficini, C., Dittrich-Domergue, F., Maneta-Peyret, L., Breeze, E., Zottini, M., Formentin, E., Filippini, F., Brocard, L.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.15.694276

Model Organism: Arabidopsis thaliana

phytolongin PHYL2.1 SNARE root cell division Arabidopsis thaliana

Metabolic engineering of a tyrosine-specific phenylpropanoid pathway in plants

Authors: Van Beirs, C., Bentelspacher, M., Xie, C., Van de Velde, C., Desmet, S., De Wulf, R., Boerjan, W., Barros-Rios, J., Vanholme, B.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.16.694581

Model Organism: Arabidopsis thaliana

phenylpropanoid biosynthesis phenylalanine/tyrosine ammonia‑lyase (PTAL)Arabidopsis thaliana c4h mutant rescue cis‑cinnamic acid

A photoprotection dial maps holistic light-stress response in diatoms

Authors: Croteau, D., Jaubert, M., Quemar, T., Falciatore, A., Maes, A., Bailleul, B.

Date: 2025-12-15 · Version: 1

DOI: 10.64898/2025.12.11.693581

Model Organism: Phaeodactylum tricornutum

non-photochemical quenching Phaeodactylum tricornutum high-light stress transcriptomics photosynthetic regulation

Arabidopsis EARLY FLOWERING 4 recruits EARLY FLOWERING 3 to the nucleus to facilitate gene repression

Authors: Ronald, J., Davis, S. J.

Date: 2025-12-12 · Version: 1

DOI: 10.64898/2025.12.12.688453

Model Organism: Arabidopsis thaliana

Evening Complex ELF3 nuclear recruitment ELF4 function hypocotyl elongation Arabidopsis thaliana

HY5 enhances Arabidopsis tolerance to combined high light and heat stress by coordinating photoprotection and hormone signaling

Authors: Balfagon, D., Segarra-Medina, C., Chavez-Jacome, D., dos Reis de Oliveira, T., Santa-Catarina, C., Silveira, V.

Date: 2025-12-12 · Version: 1

DOI: 10.64898/2025.12.08.693111

Model Organism: Arabidopsis thaliana

HY5 transcription factor high light heat stress photosynthetic efficiency non‑photochemical quenching Arabidopsis thaliana

Molecular response of the diatom Coscinodiscus granii and its co-occurring dictyochophyte during Lagenisma coscinodisci parasite infection

Authors: Orvain, C., Bertrand, L., Moussy, A., Porcel, B. M., Vallet, M., Carradec, Q., Thurotte, A.

Date: 2025-12-12 · Version: 2

DOI: 10.1101/2025.10.10.681168

Model Organism: Coscinodiscus granii

diatom‑parasite interactions oomycete effectors Coscinodiscus granii transcriptomics metabolomics

GWAs reveals SUBER GENE1-mediated suberization via Type One Phosphatases

Authors: Han, J.-P., Lefebvre-Legendre, L., Yu, J., Capitao, M. B., Beaulieu, C., Gully, K., Shukla, V., Wu, Y., Boland, A., Nawrath, C., Barberon, M.

Date: 2025-12-12 · Version: 2

DOI: 10.1101/2025.05.06.652434

Model Organism: Arabidopsis thaliana

suberin deposition Arabidopsis thaliana GWAS SBG1 TOPP phosphatases

Turnip mosaic virus drives selective filtering and community reassembly in the Arabidopsis thaliana root microbiome in a genotype-specific manner

Authors: Cobos, A., Udaondo, Z., Gonzalo, I., Castrillo, G., Valli, A. A.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.11.693707

Model Organism: Arabidopsis thaliana

Turnip mosaic virus root microbiome Arabidopsis thaliana bacterial diversity co-occurrence network

Native catalase expression in Arabidopsis thaliana is more than sufficient to limit excess decarboxylation from photorespiratory intermediates

Authors: Gregory, L. M., Scott, K. F., Twinamaani, F., Strand, D. D., Bao, H., Weber, A. P. M., Walker, B. J.

Date: 2025-12-09 · Version: 1

DOI: 10.64898/2025.12.06.692765

Model Organism: Arabidopsis thaliana

catalase hydrogen peroxide photorespiration Arabidopsis thaliana heterologous expression

The mitochondrial splicing factor PPR9 encoded by the AT1G03560 gene-locus is essential for the maturation of several nad transcripts in Arabidopsis plants

Authors: Kobaivanov, E., Kitel, M., Matan, R., Mizrahi, R., Carmi, N., Ostersetzer-Biran, O.

Date: 2025-12-05 · Version: 1

DOI: 10.64898/2025.12.04.692323

Model Organism: Arabidopsis thaliana

PPR9 mitochondrial RNA splicing respiratory complex I biogenesis Arabidopsis thaliana embryo rescue

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