Keywords: paralog processing, transcriptome, polyploidy, CO2 enrichment, ascorbate, multi-omics

Latest 16 Papers

Chromosomal evolution and polyploidy dynamics in tribe Andropogoneae (Poaceae: Panicoideae): insights from phylogenomic reconstruction

Authors: Bispo, A. T. H., Silva, C., Welker, C. A. D.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.09.693223

Model Organism: General

chromosomal evolution Andropogoneae plastome sequencing Bayesian inference polyploidy

The origins and adaptive consequences of polyploidy in a dominant prairie grass

Authors: Phillips, A. R., AuBuchon-Elder, T., Barry, K. W., Stitzer, M. C., Buckler, E. S., Bukowski, R., Cameron, B., Cryan, E., Forrestel, E., Grabowski, P. P., Grimwood, J., Jenkins, J. W., Shu, S., Lipzen, A., Lovell, J. T., Minx, P., Porter, J., Runcie, D. E., Schmutz, J., Solomon, B., Stephens, J., Sun, Q., Williams, M., Yoshinaga, Y., Flint-Garcia, S., Romay, C., Kellogg, E. A., Ross-Ibarra, J.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.25.690567

Model Organism: Andropogon gerardi

polyploidy whole genome duplication Andropogon gerardi neopolyploid xeric adaptation

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

High-Quality Draft Genome Assemblies and Comparative Genomics of Three Bouteloua Species (Poaceae: Chloridoideae)

Authors: Ganesan, M. A., Hale, C. O., Romay, M. C., Buckler, E. S., Stitzer, M. C.

Date: 2025-10-17 · Version: 1

DOI: 10.1101/2025.10.15.682643

Model Organism: Multi-species

Bouteloua PacBio HiFi genome assembly polyploidy transposable elements

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

Apomixis frequency in polyploid wild populations of Psidium cattleyanum f. lucidum (Myrteae, Myrtaceae)

Authors: Souza-Perez, M., Machado, R. M., Vaio, M., Borges, A., Hormaza, J. I., Speroni, G.

Date: 2025-08-22 · Version: 1

DOI: 10.1101/2025.08.18.670884

Model Organism: Psidium cattleyanum

apomixis polyploidy flow cytometric seed screen microsatellite genotyping population genetic structure

Pioneer bark beetle attacks induce multifaceted localized defense responses in Norway spruce

Authors: Ramires, M. J., Netherer, S., Schebeck, M., Hummel, K., Schlosser, S., Razzazi-Fazeli, E., Ertl, R., Ahmad, M., Espinosa-Ruiz, A., Carrera, E., Arc, E., Martinez-Godoy, M. A., Banos, J., Caballero, T., Ledermann, T., van Loo, M., Trujillo-Moya, C.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668443

Model Organism: Picea abies

Norway spruce bark beetle defense multi-omics jasmonic acid phenolic compounds

Virus-induced upregulation of mitochondrial metabolism modulates cytosolic redox balance and defense responses

Authors: Hou, L.-Y., Wu, C.-H., Lin, N.-S.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.05.663277

Model Organism: Nicotiana benthamiana

metabolic reprogramming Bamboo mosaic virus mitochondrial metabolism redox balance multi-omics

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

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