Keywords: paralog processing, transcriptome, root microbiome, nutrient signaling

Latest 11 Papers

METABOLIC AND TRANSCRIPTOMIC ANALYSES IDENTIFY COORDINATED RESOURCE REALLOCATION IN RESPONSE TO PHOSPHATE SUPPLY IN HEMP

Authors: Wee Y, B., Berkowitz, O., Ng, S., Pegg, A., Whelan, J., Jost, R.

Date: 2025-12-23 · Version: 2

DOI: 10.1101/2025.09.18.677093

Model Organism: Cannabis sativa

Cannabis sativa phosphate nutrition transcriptomics source‑sink regulation nutrient signaling

Turnip mosaic virus drives selective filtering and community reassembly in the Arabidopsis thaliana root microbiome in a genotype-specific manner

Authors: Cobos, A., Udaondo, Z., Gonzalo, I., Castrillo, G., Valli, A. A.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.11.693707

Model Organism: Arabidopsis thaliana

Turnip mosaic virus root microbiome Arabidopsis thaliana bacterial diversity co-occurrence network

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Model Organism: Pisum sativum

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

TPS Proteins coordinate plant growth with sugar availability via the SnRK1 Kinase

Authors: Reis-Barata, D., Confraria, A., Margalha, L., Peixoto, B., Lopes, F. L., Belda-Palazon, B., Jurke, B., Arrivault, S., Shukla, V., Feil, R., Licausi, F., Kaschani, F., Kaiser, M., Caldana, C., Stitt, M., Lunn, J. E., Baena-Gonzalez, E.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670254

Model Organism: Arabidopsis thaliana

trehalose 6-phosphate (T6P)SnRK1 kinase TPS5/6/7 proteins Arabidopsis thaliana nutrient signaling

Melatonin enhances peanut productivity by enriching root-associated nitrogen fixing bacteria

Authors: Muhammad, A., Kong, X., Li, L., Khan, M. H. U., Jia, P., Miao, C., Zhang, Z.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669620

Model Organism: Arachis hypogaea

melatonin Arachis hypogaea root microbiome Proteobacteria enrichment seed treatment

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1

DOI: 10.1101/2025.06.26.661737

Model Organism: Solanum lycopersicum

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome

Plant specialised metabolites modulate the molecular signatures of host-bacteria and bacteria-bacteria interactions

Authors: Rouyer, L., Becker, C., Schandry, N.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.06.658260

Model Organism: General

benzoxazinoids root microbiome plant‑soil chemical legacy bacterial‑plant interactions holobiont profiling

Iron retention coupled with trade-offs in localized symbiotic effects confers tolerance to combined iron deficiency and drought in soybean

Authors: Hasan, M. R., Thapa, A., Kabir, A. H.

Date: 2025-03-24 · Version: 2

DOI: 10.1101/2025.01.02.631154

Model Organism: Glycine max

soybean (Glycine max)iron deficiency drought stress root microbiome multi‑omics

Transcriptional shifts and microbiome dynamics in sorghum roots during vegetative growth under drought stress

Authors: Kabir, A. H., Brailey-Jones, P., Abdelrahman, M., Legeay, J., Ahmed, B., Tran, L.-S. P., Bennetzen, J. L.

Date: 2025-02-15 · Version: 4

DOI: 10.1101/2024.07.19.604343

Model Organism: Sorghum bicolor

sorghum drought stress ferritin root microbiome LC-MS

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