Keywords: paralog processing, transcriptome, transcriptome reprogramming, phenotyping, ascorbate, tomato

Latest 26 Papers

Transcriptional responses of Solanum lycopersicum to three distinct parasites reveal host hubs and networks underlying parasitic successes

Authors: Truch, J., Jaouannet, M., Da Rocha, M., Kulhanek-Fontanille, E., Van Ghelder, C., Rancurel, C., Migliore, O., Pere, A., Jaubert, S., Coustau, C., Galiana, E., Favery, B.

Date: 2026-01-23 · Version: 1

DOI: 10.64898/2026.01.22.701158

Model Organism: Solanum lycopersicum

tomato pathogen compatibility transcriptomics co‑expression network Arabidopsis interactome

Features affecting Cas9-Induced Editing Efficiency and Patterns in Tomato: Evidence from a Large CRISPR Dataset

Authors: Cucuy, A., Ben-Tov, D., Melamed-Bessudo, C., Honig, A., Cohen, B. A., Levy, A. A.

Date: 2026-01-07 · Version: 1

DOI: 10.64898/2026.01.06.696182

Model Organism: Solanum lycopersicum

CRISPR/Cas9 ATAC-seq chromatin accessibility microhomology‑mediated end joining tomato

Root-Suppressed Phenotype of Tomato Rs Mutant is Seemingly Related to Expression of Root-Meristem-Specific Sulfotransferases

Authors: Kumari, A., Gupta, P., Santisree, P., Pamei, I., Valluri,, S., Sharma, K., Venkateswara Rao, K., Shukla, S., Nama, S., Sreelakshmi, Y., Sharma, R.

Date: 2026-01-03 · Version: 1

DOI: 10.64898/2026.01.03.697460

Model Organism: Solanum lycopersicum

root development sulfur metabolism sulfotransferase radiation‑induced mutant tomato

A Solanoeclepin A precursor functions as a new rhizosphere signaling molecule recruiting growth-promoting microbes under nitrogen deficiency

Authors: Abedini, D., Guerrieri, A., Jain, R., White, F., Koomen, J., Yang, Y., Wang, K., Kramer, G., Bouwmeester, H., Dong, L.

Date: 2025-12-29 · Version: 1

DOI: 10.64898/2025.12.29.696744

Model Organism: Solanum lycopersicum

Solanoeclepin A nitrogen deficiency rhizosphere microbiome Massilia tomato

Quantitative trait locus mapping of root exudate metabolome in a Solanum lycopersicum Moneymaker x S. pimpinellifolium RIL population and their putative links to rhizosphere microbiome

Authors: Kim, B., Kramer, G., Leite, M. F. A., Snoek, B. L., Zancarini, A., Bouwmeester, H.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.17.693946

Model Organism: Solanum lycopersicum

root exudates untargeted metabolomics quantitative trait loci tomato plant‑microbe interactions

Thermotolerant pollen tube growth is controlled by RALF signaling.

Authors: Althiab Almasaud, R., Ouonkap Yimga, S. V., Ingram, J., Oseguera, Y., Alkassem Alosman, M., Travis, C., Henry, A., Medina, M., Oulhen, N., Wessel, G. M., Delong, A., Pease, J., DaSilva, N., Johnson, M.

Date: 2025-11-12 · Version: 2

DOI: 10.1101/2025.10.25.684177

Model Organism: Solanum lycopersicum

thermotolerant pollen tube growth heat stress RALF signaling pollen tube integrity tomato

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1

DOI: 10.1101/2025.10.20.683360

Model Organism: Pinus nigra

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

Discovery of tomato UDP-glucosyltransferases involved in bioactive jasmonate homeostasis using limited proteolysis-coupled mass spectrometry

Authors: Venegas-Molina, J., Mohnike, L., Selma Garcia, S., Janssens, H., Colembie, R., Kimpe, I., Jaramillo-Madrid, A. C., Lacchini, E., Winne, J. M., Van Damme, P., Feussner, I., Goossens, A., Sola, K.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.15.682356

Model Organism: Solanum lycopersicum

jasmonic acid limited proteolysis‑coupled mass spectrometry UDP‑glucuronosyltransferase JA catabolism tomato

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

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