Keywords: paralog processing, transcriptome, transcriptomic analysis, metabarcoding, SWI3, Arabidopsis thaliana

Latest 256 Papers

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

PUMILIOs and m6A-ECT2/ECT3 share mRNA targets and exert opposing control over organogenesis

Authors: Chen, J., Sanges Ametlle, M., Rennie, S., Arribas-Hernandez, L., Brodersen, P.

Date: 2025-10-12 · Version: 1

DOI: 10.1101/2025.10.11.681827

Model Organism: Arabidopsis thaliana

PUF proteins YTHDF m6A RNA methylation Arabidopsis thaliana growth regulation

CDM1 is required for meiotic progression and genome integrity during male meiosis in Arabidopsis

Authors: Davda, J. N., Nalli, A., Singh, D. K., Frank, K., Fernandes, J., Siddiqi, I.

Date: 2025-10-12 · Version: 1

DOI: 10.1101/2025.10.10.681646

Model Organism: Arabidopsis thaliana

CDM1 meiotic DNA damage response Arabidopsis thaliana chromosome condensation pre‑meiotic replication repair

Artificial Soil (ArtSoil): recreating soil conditions in synthetic plant growth media

Authors: Kaplunova, V., Alioui, H., Griguschies, T., Duran, P., Lautwein, T., Metzger, S., Loo, E.

Date: 2025-10-11 · Version: 1

DOI: 10.1101/2025.10.09.681539

Model Organism: Arabidopsis thaliana

Artificial Soil (ArtSoil)Arabidopsis thaliana soil microbiota sugar‑free plant growth single‑cell transcriptomics

Jasmonic Acid Oxidases (JAO) define a new branch in jasmonate metabolism towards 11OH-jasmonic acid and its glucosylated derivative

Authors: Heitz, T., Marquis, V., Zumsteg, J., Dannawi, D., Schutz, D., Miesch, L.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681447

Model Organism: Arabidopsis thaliana

jasmonates hydroxy‑JA isomers Jasmonic Acid Oxidases IAR3 and ILL6 amido hydrolases Arabidopsis thaliana

Delineating plant responses to the 3',5'- and 2',3'-cAMP isomers

Authors: Davide, E., Domingo, G., Di Iacovo, A., Marsoni, M., Yun, P., Gehring, C., Bossi, E., Shabala, S., Bracale, M., Vannini, C.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681331

Model Organism: Arabidopsis thaliana

cAMP isomers Arabidopsis thaliana comparative proteomics electrophysiology CNGC2/CNGC18 gating

Deciphering Photosynthetic Protein Networks: A Crosslinking-MS Strategy for Studying Functional Thylakoid Membranes

Authors: Frances, N., Giustini, C., Finazzi, G., Ferro, M., Albanese, P.

Date: 2025-10-08 · Version: 1

DOI: 10.1101/2025.10.07.681025

Model Organism: Multi-species

photosynthesis thylakoid membranes crosslinking mass spectrometry protein complexes Arabidopsis thaliana

Antifungal activity and mechanism of limonene against Fusarium oxysporum, a pathogen of potato dry rot

Authors: Xia, Q., Dong, P.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.06.675995

Model Organism: Fusarium oxysporum

limonene Fusarium oxysporum potato dry rot bio‑based fungicide transcriptomic analysis

Ethylene-induced host responses enhance resistance against the root-parasitic plant Phelipanche aegyptiaca

Authors: Park, S., Yang, C., Westwood, J.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680554

Model Organism: Multi-species

Phelipanche aegyptiaca ethylene signaling host resistance parasitic weed Arabidopsis thaliana

(3R, 7S)-11-hydroxy-jasmonic acid is a major oxidative shunt product of jasmonate catabolism in Arabidopsis thaliana

Authors: Matumoto, K., Mitsui, M., Kaji, T., Gao, R., Kitaoka, N., Otaki, T., Nishizato, Y., Matsuura, H., Ueda, M.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.03.680387

Model Organism: Arabidopsis thaliana

jasmonic acid 11-hydroxy-JA JOX enzymes Arabidopsis thaliana JA catabolism

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