Keywords: paralog processing, transcriptome, transcriptomics, Arabidopsis thaliana

Latest 275 Papers

Jasmonic Acid Oxidases (JAO) define a new branch in jasmonate metabolism towards 11OH-jasmonic acid and its glucosylated derivative

Authors: Heitz, T., Marquis, V., Zumsteg, J., Dannawi, D., Schutz, D., Miesch, L.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681447

jasmonates hydroxy‑JA isomers Jasmonic Acid Oxidases IAR3 and ILL6 amido hydrolases Arabidopsis thaliana

Delineating plant responses to the 3',5'- and 2',3'-cAMP isomers

Authors: Davide, E., Domingo, G., Di Iacovo, A., Marsoni, M., Yun, P., Gehring, C., Bossi, E., Shabala, S., Bracale, M., Vannini, C.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.09.681331

Model Organism: Arabidopsis thaliana

cAMP isomers Arabidopsis thaliana comparative proteomics electrophysiology CNGC2/CNGC18 gating

Deciphering Photosynthetic Protein Networks: A Crosslinking-MS Strategy for Studying Functional Thylakoid Membranes

Authors: Frances, N., Giustini, C., Finazzi, G., Ferro, M., Albanese, P.

Date: 2025-10-08 · Version: 1

DOI: 10.1101/2025.10.07.681025

Model Organism: Multi-species

photosynthesis thylakoid membranes crosslinking mass spectrometry protein complexes Arabidopsis thaliana

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Model Organism: Pisum sativum

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

Ethylene-induced host responses enhance resistance against the root-parasitic plant Phelipanche aegyptiaca

Authors: Park, S., Yang, C., Westwood, J.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680554

Model Organism: Multi-species

Phelipanche aegyptiaca ethylene signaling host resistance parasitic weed Arabidopsis thaliana

(3R, 7S)-11-hydroxy-jasmonic acid is a major oxidative shunt product of jasmonate catabolism in Arabidopsis thaliana

Authors: Matumoto, K., Mitsui, M., Kaji, T., Gao, R., Kitaoka, N., Otaki, T., Nishizato, Y., Matsuura, H., Ueda, M.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.03.680387

Model Organism: Arabidopsis thaliana

jasmonic acid 11-hydroxy-JA JOX enzymes Arabidopsis thaliana JA catabolism

Sorghum embryos undergoing B chromosome elimination express B-variants of mitotic-related genes

Authors: Bojdova, T., Hlouskova, L., Holusova, K., Svacina, R., Hribova, E., Ilikova, I., Thiel, J., Kim, G., Pleskot, R., Houben, A., Bartos, J., Karafiatova, M.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679447

Model Organism: Sorghum purpureosericeum

DNA elimination B chromosome Sorghum purpureosericeum kinetochore proteins transcriptomics

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

Candidatus Phytoplasma-induced Retrogressive Morphogenesis in Sesame (Sesamum indicum L.): Tissue-Specific Metabolic and Transcriptomic Reprogramming

Authors: Banerjee, S., Gangopadhyay, G.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679221

Model Organism: Sesamum indicum

phytoplasma infection Sesamum indicum metabolomics transcriptomics tissue-specific response

Arabidopsis SWEET12 regulates sugar allocation and defense responses to sustain beneficial association with Serendipita indica in roots

Authors: Jogawat, A., Sanyasi, M., Menon, S. H., Goyal, D., Nair, A. M., Vadassery, J.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679152

Model Organism: Arabidopsis thaliana

SWEET12 Serendipita indica Arabidopsis thaliana mutualistic symbiosis sugar transport

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