Keywords: paralog processing, transcriptome analysis, comparative transcriptomics, transcriptomics, CRISPR/Cas9

Latest 70 Papers

Cis-regulatory architecture downstream of FLOWERING LOCUS T underlies quantitative control of flowering

Authors: Zhou, H.-R., Doan, D. T. H., Hartwig, T., Turck, F.

Date: 2025-09-25 · Version: 1

DOI: 10.1101/2025.09.23.678055

Model Organism: Arabidopsis thaliana

FLOWERING LOCUS T enhancer architecture cis‑regulatory logic CRISPR/Cas9 chromatin accessibility

Choosing the Best Route: Comparative Optimization of Wheat Transformation Methods for Improving Yield by Targeting TaARE1-D with CRISPR/Cas9

Authors: Tek, M. I., Budak Tek, K., Sarikaya, P., Ahmed, A. R., Fidan, H.

Date: 2025-09-12 · Version: 1

DOI: 10.1101/2025.09.11.675438

Model Organism: Triticum aestivum

Triticum aestivum CRISPR/Cas9 Agrobacterium-mediated transformation TaARE1-D yield improvement

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

An evolutionary leap in plant reproduction: From archegonia and motile sperm to embryo sacs and pollen tubes

Authors: Chen, D., Tang, L., Wang, F., Zhang, M., Zheng, S., Xia, M., Wu, Q., Cao, M., Jia, P., Guo, Y., Chen, F., Peng, X., Hu, J., Sun, M., Li, H., Zhang, L., Yang, W.

Date: 2025-08-06 · Version: 1

DOI: 10.1101/2025.08.04.668594

Model Organism: Ginkgo biloba

Ginkgo biloba reproductive transition transcriptome analysis pollen tube guidance MYB98-CRP-ECS module

tRNA-Based Polycistronic CRISPR/Cas9 System Boosts Efficiency of Multi-Gene Deletion in the Moss Physcomitrella.

Authors: Kozgunova, E.

Date: 2025-08-01 · Version: 1

DOI: 10.1101/2025.07.29.667574

Model Organism: Physcomitrium patens

CRISPR/Cas9 polycistronic tRNA‑gRNA array large gene deletion multiplex editing Physcomitrium patens

A sublethal drought and rewatering time course reveals intricate patterning of responses in the annual Arabidopsis thaliana

Authors: Fitzek-Campbell, E., Psaroudakis, D., Weisshaar, B., Junker, A., Braeutigam, A.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666782

Model Organism: Arabidopsis thaliana

drought stress Arabidopsis thaliana transcriptomics high‑throughput phenotyping biomarker transcripts

Transcriptomics uncovers molecular mechanisms underlying salt-inhibited root growth in Festuca rubra

Authors: Lan, B., Ru, D., Du, F. K., Yin, K.

Date: 2025-07-26 · Version: 1

DOI: 10.1101/2025.07.22.665687

Model Organism: Festuca rubra

salt stress root growth inhibition Festuca rubra transcriptomics hormone signaling

Integrative transcriptomic and phosphoproteomic analysis reveals key components of SnRK1 signaling network in rice

Authors: Faria-Bates, M. C., Maurya, C., Jamsheer K, M., Srivastava, V.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.22.666209

Model Organism: Oryza sativa

SnRK1 rice CRISPR/Cas9 phosphoproteomics stress response

The transcriptional mechanism behind Mimosa pudica leaf-folding in response to mechanical disturbance

Authors: Buti, M., Checcucci, A., Vergata, C., Renna, L., Pollastri, S., Loreto, F., Mancuso, S., Martinelli, F.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665295

Model Organism: Mimosa pudica

Mimosa pudica mechanical stress chlorophyll fluorescence transcriptomics stress‑responsive gene expression

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