Keywords: paralog processing, transcriptome analysis, root development, GWAS, Sorghum bicolor

Latest 38 Papers

Population genomic structure of sorghum landraces across landscape, environment and culture

Authors: Vasquez Cerda, E. E., Bellis, E. S., Das, A., Slayton, E. R., Morris, G. P., Lasky, J. R.

Date: 2025-11-04 · Version: 1

DOI: 10.1101/2025.11.02.686151

Model Organism: Sorghum bicolor

Sorghum bicolor population genomics human travel time linguistic structure genetic diversity

Aggressive nitrogen assimilation during exponential growth in Chlamydomonas reinhardtii

Authors: Tibule, M., Mallawarachchi, W., Oyateru, O., Ziaeian, M., Kim, M., Dharmasiri, H. N., Lee, J.-H.

Date: 2025-11-04 · Version: 1

DOI: 10.1101/2025.11.02.686124

Model Organism: Chlamydomonas reinhardtii

nitrogen use strategies Chlamydomonas reinhardtii nitrogen assimilation transcriptome analysis nitrogen storage

Development alters genotype-environment interactions and shapes adaptation in Arabidopsis

Authors: Lawrence-Paul, E. H., Janakiraman, J., Lawrence-Paul, M. R., Ben-Zeev, R., Xu, Y., Penn, A., Lasky, J. R.

Date: 2025-11-03 · Version: 2

DOI: 10.1101/2025.05.13.653704

Model Organism: Arabidopsis thaliana

vegetative phase change drought adaptation genotype-by-environment interaction GWAS developmental trade‑offs

Maternal Light and Temperature Modulate Seed Longevity in Arabidopsis

Authors: Mazhari Azad, S., Gill Villar, D., Yordan, E., Mestre Pluvinet, P., Forment, J., Tarraga Herrero, S., Gonzalez, C., Ninoles Rodenes, R., Gadea, J.

Date: 2025-10-19 · Version: 1

DOI: 10.1101/2025.10.19.683148

Model Organism: Arabidopsis thaliana

seed longevity maternal environment effect Arabidopsis thaliana temperature and light interaction transcriptome analysis

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Novel strategies to deal with salinity in Sorghum bicolor seedlings

Authors: Sutka, M. R., Caceres, P. D., Recchi, M., Dengis, A. S., Manzur, M. E.

Date: 2025-10-02 · Version: 1

DOI: 10.1101/2025.10.02.680130

Model Organism: Sorghum bicolor

Sorghum bicolor salinity stress silicon transport leaf prickles NIP aquaporins

Wild genes to the rescue: High-throughput genomics uncovers the wild source of broomrape resistance in sunflower

Authors: Sisou, D., Ziadne, H., Eizenberg-Weiss, M., Eizenberg, H., Hubner, S.

Date: 2025-09-16 · Version: 1

DOI: 10.1101/2025.09.14.676089

Model Organism: Helianthus annuus

Orobanche cumana Helianthus annuus GWAS k‑mer mapping resistance QTL

Single-cell-level response to drought in Sorghum bicolor reveals novel targets for improving water use efficiency

Authors: Stata, M., Greenblum, S., Yoshinaga, Y., Koriabine, M., Keymanesh, K., Karia, P., Zhao, C., O'Malley, R. C., Rhee, S. Y.

Date: 2025-08-28 · Version: 1

DOI: 10.1101/2025.08.28.671794

Model Organism: Sorghum bicolor

drought stress Sorghum bicolor single-nucleus RNA sequencing cell-type specific transcription bioenergy crop

Sorghum Metabolic Atlas: Large-Scale Mapping of Subcellular Enzyme Localization in Sorghum bicolor

Authors: Karia, P., Dwyer, W., Kloss-schmidt, A., Hawkins, C., Xue, B., Ginzburg, D., Gutierrez, M. L., Mewalal, R., Blaby, I., Ehrhardt, D. W., Rhee, S. Y.

Date: 2025-08-27 · Version: 1

DOI: 10.1101/2025.08.24.672047

Model Organism: Sorghum bicolor

Sorghum bicolor enzyme subcellular localization high-throughput protoplast transformation fluorescent protein tagging metabolic compartmentalization

An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670748

Model Organism: Solanum tuberosum

high-density SNP array potato (Solanum tuberosum)genomic-assisted breeding GWAS polyphenol oxidase activity

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