Keywords: paralog processing, transcriptome analysis, root exudates, quantitative trait loci

Latest 17 Papers

Quantitative trait locus mapping of root exudate metabolome in a Solanum lycopersicum Moneymaker x S. pimpinellifolium RIL population and their putative links to rhizosphere microbiome

Authors: Kim, B., Kramer, G., Leite, M. F. A., Snoek, B. L., Zancarini, A., Bouwmeester, H.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.17.693946

Model Organism: Solanum lycopersicum

root exudates untargeted metabolomics quantitative trait loci tomato plant‑microbe interactions

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.23.689882

Model Organism: Hordeum vulgare

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis

Aggressive nitrogen assimilation during exponential growth in Chlamydomonas reinhardtii

Authors: Tibule, M., Mallawarachchi, W., Oyateru, O., Ziaeian, M., Kim, M., Dharmasiri, H. N., Lee, J.-H.

Date: 2025-11-04 · Version: 1

DOI: 10.1101/2025.11.02.686124

Model Organism: Chlamydomonas reinhardtii

nitrogen use strategies Chlamydomonas reinhardtii nitrogen assimilation transcriptome analysis nitrogen storage

Evaluation of combined root exudate and rhizosphere microbiota sampling approaches to elucidate plant-soil-microbe interaction

Authors: Escudero-Martinez, C., Browne, E. Y., Schwalm, H., Santangeli, M., Brown, M., Brown, L., Roberts, D. M., Duff, A. M., Morris, J., Hedley, P. E., Thorpe, P., Abbott, J. C., Brennan, F., Bulgarelli, D., George, T. S., Oburger, E.

Date: 2025-10-24 · Version: 1

DOI: 10.1101/2025.10.23.683011

Model Organism: Hordeum vulgare

root exudates rhizosphere microbiota barley sampling protocols amplicon sequencing

Maternal Light and Temperature Modulate Seed Longevity in Arabidopsis

Authors: Mazhari Azad, S., Gill Villar, D., Yordan, E., Mestre Pluvinet, P., Forment, J., Tarraga Herrero, S., Gonzalez, C., Ninoles Rodenes, R., Gadea, J.

Date: 2025-10-19 · Version: 1

DOI: 10.1101/2025.10.19.683148

Model Organism: Arabidopsis thaliana

seed longevity maternal environment effect Arabidopsis thaliana temperature and light interaction transcriptome analysis

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Legacy of warming and microbial treatments shape root exudates and rhizosphere fungal communities of a tropical tree

Authors: Masanga, J., Bartz, P., Villani, G. H., Grullon-Penkova, I. F., Wood, T. E., Bachelot, B., Lasky, J. R.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669667

Model Organism: Guarea guidonia

ecometabolomics root exudates fungal community profiling Guarea guidonia soil moisture

An evolutionary leap in plant reproduction: From archegonia and motile sperm to embryo sacs and pollen tubes

Authors: Chen, D., Tang, L., Wang, F., Zhang, M., Zheng, S., Xia, M., Wu, Q., Cao, M., Jia, P., Guo, Y., Chen, F., Peng, X., Hu, J., Sun, M., Li, H., Zhang, L., Yang, W.

Date: 2025-08-06 · Version: 1

DOI: 10.1101/2025.08.04.668594

Model Organism: Ginkgo biloba

Ginkgo biloba reproductive transition transcriptome analysis pollen tube guidance MYB98-CRP-ECS module

Development of a Nested Association Mapping (NAM) population for untangling complex traits in lentil (Lens culinaris Medik.)

Authors: Neupane, S., Stonehouse, R., Ramsay, L., Baker, M., Haile, T., Konkin, D. J., Sidebottom, C., Bett, K.

Date: 2025-06-19 · Version: 1

DOI: 10.1101/2025.06.17.660011

Model Organism: Lens culinaris

Nested Association Mapping Lentil (Lens culinaris)exome capture sequencing quantitative trait loci phenological traits

Transcriptomic analysis of genotypes derived from Rosa wichurana unveils molecular mechanisms associated with quantitative resistance to Diplocarpon rosae

Authors: Lambelin, L., Thouroude, T., Jeauffre, J., Chameau, J., Vilfroy, C., Boursier, C., Aubourg, S., Pelletier, S., Lopez Arias, D. C., Hibrand-Saint Oyant, L., Soufflet-Freslon, V., Foucher, F., Paillard, S.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.13.659350

Model Organism: Rosa

black spot disease Diplocarpon rosae quantitative trait loci RNA sequencing plant defense response

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