Keywords: paralog processing, transcriptome analysis, transcriptomic analysis, plant immunity

Latest 33 Papers

Molecular Insights into the Production of Extracellular Vesicles by Plants

Authors: Koch, B. L., Gardner, D., Smith, H., Bracewell, R., Awdey, L., Foster, J., Borniego, M. L., Munch, D. H., Nielsen, M. E., Pasupuleti, R., Trinidad, J., Rutter, B., Thordal-Christensen, H., Innes, R. W.

Date: 2025-06-17 · Version: 1

DOI: 10.1101/2025.06.16.659989

Model Organism: Arabidopsis thaliana

extracellular vesicles Arabidopsis thaliana EXO70 exocyst complex proximity labeling plant immunity

Spatial and single-cell transcriptomics capture two distinct cell states in plant immunity

Authors: Hu, Y., Schaefer, R., Rendleman, M., Slattery, A., Cramer, A., Nahiyan, A., Breitweiser, L., Shah, M., Kaehler, E., Yao, C., Bowling, A., Crow, J., May, G., Tabor, G., Thatcher, S., Uppalapati, S. R., Muppirala, U., Deschamps, S.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657683

Model Organism: Glycine max

spatial transcriptomics single-nuclei RNA-seq plant immunity Phakopsora pachyrhizi cell non‑autonomous defense

Constitutive expression of full-length or partial of SOC1 genes for yield enhancement in tomato

Authors: Danial, G. H., Jaikham, J., Song, G.-q.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657751

Model Organism: Solanum lycopersicum

SOC1 tomato fruit yield heterologous gene expression branching transcriptomic analysis

Diversification of the "EDVID" packing motif underpins structural and functional variation in plant NLR coiled-coil domains

Authors: Sulkowski, O., Ovodova, A., Leisse, A., Gögelein, K., Förderer, A.

Date: 2025-06-03 · Version: 1

DOI: 10.1101/2025.06.01.657260

Model Organism: Arabidopsis thaliana

CC-NLR EDVID motif plant immunity motif evolution structural diversity

Physiological characterization in a somaclonal mutant for fruit shape derived from persimmon 'Hiratanenashi'

Authors: Horiuchi, A., Matsuzaki, R., Onoue, N., Ushijima, K., Kubo, Y., Akagi, T., Minamikawa, M. F.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.19.654774

Model Organism: Diospyros kaki

fruit shape persimmon (Diospyros kaki)elliptic Fourier descriptor transcriptome analysis WOX13

G3BP1 Phosphorylation Regulates Plant Immunity in Arabidopsis

Authors: Hirt, H., Abdulhakim, F., Abdulfaraj, A., Rayapuram, N.

Date: 2025-05-08 · Version: 1

DOI: 10.1101/2025.05.06.652493

Model Organism: Arabidopsis thaliana

MAPK signaling AtG3BP1 phosphorylation plant immunity stomatal defense

Actin Depolymerization Factors (ADFs) Moonlighting: Nuclear Immune Regulation by Interacting with WRKY Transcription Factors and Shaping the Transcriptome

Authors: Li, P., Kelley, B., Li, Z., Procter, B., Corrion, A., Xie, X., Sheick, R., Lu, Y.-j., Nomoto, M., Wei, C.-i., Tada, Y., He, S.-Y., Xiao, S., Day, B.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.29.651294

Model Organism: Arabidopsis thaliana

actin depolymerization factors nuclear transcription regulation WRKY transcription factors plant immunity Arabidopsis thaliana

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

An ERF transcription factor StPTI5, a novel regulator of endophyte community maintenance in potato

Authors: Lukan, T., Kraigher, B., Pogacar, K., Stare, K., Grubar Kovacic, T., Zagorscak, M., Petek, M., Stefanic, P., Vozelj, A., Levak, V., Mahkovec Povalej, T., Garcia, J. M., Pozo, M. J., Mandic-Mulec, I., Gruden, K.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.24.650297

Model Organism: Solanum tuberosum

PTI5 ethylene signaling plant immunity beneficial microbes Solanum tuberosum

A hydrophobic core in the coiled-coil domain is essential for NRC resistosome function

Authors: Wang, H.-Y., Yuen, E. L. H., Lee, K.-T., Goh, F.-J., Bozkurt, T. O., Wu, C.-H.

Date: 2025-04-08 · Version: 2

DOI: 10.1101/2025.01.21.634219

Model Organism: General

NLR coiled-coil domain hydrophobic core NRC4 plant immunity

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