Keywords: paralog processing, transcriptome reprogramming, CO2 enrichment, gene expression, codon usage, RNA‑seq

Latest 24 Papers

Long-term salinity reveals genotype-specific transcriptional reprogramming in eggplant

Authors: Martina, M., Morabito, C., Moglia, A., Milani, A. M., Barchi, L., Acquadro, A., Comino, C., Secchi, F., Portis, E.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.13.699247

Model Organism: Solanum melongena

salinity tolerance eggplant (Solanum melongena)RNA‑seq genotype‑specific transcriptional response long‑term salt stress

A multi-omics approach to maize (Zea mays) tassel development

Authors: Hartmann, F., Mathioni, S., Kakrana, A., Meyers, B. C., Walbot, V., van der Linde, K.

Date: 2026-01-02 · Version: 1

DOI: 10.64898/2026.01.01.697295

Model Organism: Zea mays

Zea mays tassel development male inflorescence RNA‑seq small RNA sequencing miRNA dynamics

Genome-wide Identification of the Laccase Gene Family in White Jute (Corchorus capsularis): Potential Targets for Lignin Engineering in Bast Fiber

Authors: Parida, S., Jha, D. K., Kumari, K., Pradhan, S., Dey, N., Majumder, S.

Date: 2025-12-29 · Version: 3

DOI: 10.1101/2024.07.17.603856

Model Organism: Corchorus capsularis

laccase lignification Corchorus capsularis gene expression microRNA regulation

A high-quality genome assembly and integrative data portal (Phabase) for the Mesoamerican black bean (Phaseolus vulgaris cv. Negro Jamapa)

Authors: Akyol, T. Y., Villa-Rodriguez, E. D., Salgado, H., Pacheco, E., Trujillo-Roman, N., Fechete, L. I., Andersen, S. U., Formey, D., Montiel, J.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.09.693262

Model Organism: Phaseolus vulgaris

Phaseolus vulgaris Hi‑Fi PacBio genome assembly expression atlas RNA‑seq Phabase portal

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Bacillus velezensis EU07 suppresses Fusarium graminearum via transcriptomic reprogramming

Authors: Baysal, O., Jimenez-quiros, C., Cevher-Keskin, B., Tor, M.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.10.681611

Model Organism: Fusarium graminearum

Bacillus velezensis Fusarium graminearum biocontrol RNA‑seq differentially expressed genes

Pervasive splicing in a plant DNA virus

Authors: Pott, D. M., Gao, M., Shi, C., Wang, L., Medina-Puche, L., Yagci, Z., Acatay, S., Zhang, J., Gonzalo, L., Merchante, C., Gu, L., Lozano-Duran, R.

Date: 2025-10-02 · Version: 1

DOI: 10.1101/2025.10.01.679800

Model Organism: Solanum lycopersicum

TYLCV geminivirus splicing spliceosome viral pathogenicity RNA‑seq

Microscopical and molecular characterization of the infection cycle of Phytophthora betacei during disease development on tree tomato (Solanum betaceum).

Authors: Palacios, N. G., Gonzalez-Tobon, J., Buitrago, M. C., Bautista, D., Gonzalez, L. N., Toquica, M. C., Mideros, M. F., Schornack, S., Restrepo, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.11.675658

Model Organism: Solanum betaceum

Phytophthora betacei Solanum betaceum infection cycle hemibiotrophic transition RNA‑seq

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