Keywords: paralog processing, transcriptome reprogramming, GWAS, RNA-Seq

Latest 26 Papers

Ethylene and ROS Signaling Are Key Regulators of Lateral Root Development under Salt Stress in Tomato

Authors: Rahmati Ishka, M., Zhao, J., Sussman, H., Mohanty, D., Craft, E., Yu, L., Pineros, M., Tester, M., Kawa, D., Mittler, R., Nelson, A., Fei, Z., Julkowska, M. M.

Date: 2025-04-15 · Version: 2

DOI: 10.1101/2024.06.20.599848

Model Organism: Solanum lycopersicum

root system architecture salt stress GWAS bulk segregant analysis RNA-Seq

Structure-activity relationships of coumarin and its analogs and mechanistic insights into germination inhibition by coumarin

Authors: Fukuda, K., Hyakutake, S., Oishi, T., Yoshida, M., Koga, M., Egami, C., Matsura, H., Ito, R., Tsukahara, K., Noda, M., Tomonaga, K., Chifu, K., Ichimaru, R., Fujito, E., Mori, K., Tokuyama, Y., Yoshida, T., Ryuda, N., Nagano, Y., Matsutaka, K.

Date: 2025-03-28 · Version: 2

DOI: 10.1101/2024.05.23.595645

Model Organism: Arabidopsis thaliana

coumarin germination inhibition structure-activity relationship expansin genes RNA-Seq

Host genotype shapes root mycobiota in durum wheat

Authors: TRINQUIER, M., COLOMBO, M., FREVILLE, H., JACQUES, D., ROCHER, A., LEFEBVRE, B., ROUX, C.

Date: 2025-03-06 · Version: 3

DOI: 10.1101/2024.10.27.616629

Model Organism: Triticum aestivum

wheat genotype root endophytic mycobiota ITS2 barcoding GWAS QTL

MYB59 is linked to natural variation of water use associated with warmer temperatures in Arabidopsis thaliana

Authors: Ferguson, J. N., Brendel, O., Bechtold, U.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.27.640580

Model Organism: Arabidopsis thaliana

water-use variation Arabidopsis thaliana climate adaptation GWAS MYB59

The Ustilago maydis transcription factor Nit2 regulates nitrate utilization during biotrophy and influences organic nitrogen metabolism in infected maize leaves under nitrogen limitation

Authors: Lopinski, P. L., Schulz, C., Fischer, A., Reichl, N., Engelsdorf, T., Braun, N., Voll, L. M.

Date: 2025-02-17 · Version: 2

DOI: 10.1101/2025.01.02.631094

Model Organism: Ustilago maydis

Nit2 transcription factor Ustilago maydis nitrogen metabolism RNA-Seq biotrophic infection

Genetic control of the leaf ionome in pearl millet and correlation with root and agromorphological traits

Authors: Nakombo-Gbassault, P., Arenas, S., Affortit, P., Faye, A., Flis, P., Sine, B., Moukouanga, D., Gantet, P., Kosh Komba, E., Kane, N., Bennett, M., Wells, D., Cubry, P., Bailey, E., Vigouroux, Y., Grondin, A., Laplaze, L.

Date: 2025-02-03 · Version: 1

DOI: 10.1101/2025.01.30.635630

Model Organism: Pennisetum glaucum

ionomics nutrient acquisition pearl millet GWAS candidate genes

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