Keywords: paralog processing, transcriptome reprogramming, SNP markers, genotyping-by-sequencing

Latest 9 Papers

Scaling up orphan crop research: A global genetic perspective of cowpea (Vigna unguiculata) diversity from 10,617 accessions

Authors: Pearson, S. M., Hathorn, A., Sun, S., Cruickshank, A., Shatte, T. L., Munisse, P., Macharia, M., Conner, J., Koltunow, A. M. G., Vielle-Calzada, J. P., Ozias-Akins, P., Ishii, T., Dell Acqua, M., Norton, S., Tao, Y., Jordan, D., Mace, E.

Date: 2025-11-05 · Version: 1

DOI: 10.1101/2025.11.03.686174

Model Organism: Vigna unguiculata

cowpea genetic diversity genotyping-by-sequencing germplasm collections population structure

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Genomic prediction of disease resistance provides a path to marker assisted restoration in a wetland foundation tree species

Authors: Guo, K., Ahrens, C. W., Chen, S. H., Sandhu, K., Rossetto, M., Jones, A., Tan, C., Borevitz, J. O., Edwards, R. J., Bragg, J. G.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.14.675737

Model Organism: Melaleuca quinquenervia

myrtle rust Melaleuca quinquenervia Genome Wide Association Study disease resistance SNP markers

Predicting flowering time using integrated morphophysiological and genomic data with machine learning models

Authors: Babaei, M., Nemati, H., Arouiee, H., Torkamaneh, D.

Date: 2025-08-13 · Version: 1

DOI: 10.1101/2025.08.11.669697

Model Organism: Cannabis sativa

flowering time Cannabis sativa genotyping-by-sequencing machine learning SNP markers

Whole genome sequencing-based multi-locus association mapping for kernel iron, zinc and protein content in groundnut

Authors: Sagar, U. N., Parmar, S., Gangurde, S. S., Sharma, V., Pandey, A. K., Mohinuddin, D. K., Dube, N., Bhat, R. S., John, K., Sreevalli, M. D., Rani, P. S., Singh, K., Varshney, R. K., Pandey, M. K.

Date: 2025-08-05 · Version: 1

DOI: 10.1101/2025.08.04.668427

Model Organism: Arachis hypogaea

groundnut nutritional quality GWAS SNP markers KASP

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

Omics-driven Identification of Candidate Genes and SNP markers in a Major QTL Controlling Early Heading in Rice

Authors: Rao, D., T, N. S., CG, G., Gaur, N., Jamaloddin, M., Maganti, S. M., Raman, M. S., Patel, H. K., Tiwari, S., Sonti, R. V.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.25.645207

Model Organism: Oryza sativa

heading date rice (Oryza sativa)QTL-seq SNP markers transcriptomics

Genetic Diversity, Population Structure, and Cannabinoid Variation in Feral Cannabis sativa Germplasm from the United States

Authors: Aina, A., Wenger, J., Stanton, E., Majumdar, C. G., ElSohly, M., Weiblen, G., Ellison, S.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.10.642411

Model Organism: Cannabis sativa

Cannabis sativa feral populations genotyping-by-sequencing cannabinoid profiling population structure