Keywords: paralog processing, transcriptome reprogramming, Zea mays, RNA-seq

Latest 34 Papers

The genetic architecture of leaf vein density traits and its importance for photosynthesis in maize

Authors: Coyac-Rodriguez, J. L., Perez-Limon, S., Hernandez-Jaimes, E., Hernandez-Coronado, M., Camo-Escobar, D., Alonso-Nieves, A. L., Ortega-Estrada, M. d. J., Gomez-Capetillo, N., Sawers, R. J., Ortiz-Ramirez, C. H.

Date: 2026-01-15 · Version: 1

DOI: 10.64898/2026.01.14.699362

Model Organism: Zea mays

leaf venation density C4 photosynthesis Zea mays QTL mapping MAGIC population

Southern South American Maize Landraces: A Source of Phenotypic Diversity

Authors: Dudzien, T. L., Freilij, D., Defacio, R. A., Fernandez, M., Paniego, N. B., Lia, V. V., Dominguez, P. G.

Date: 2026-01-03 · Version: 1

DOI: 10.64898/2026.01.02.697242

Model Organism: Zea mays

Zea mays maize landraces phenotypic diversity biochemical traits salt stress tolerance

The influence of heavy metal stress on the evolutionary transition of teosinte to maize

Authors: Acosta Bayona, J. J., Vallebueno-Estrada, M., Vielle-Calzada, J.-P.

Date: 2025-12-22 · Version: 2

DOI: 10.1101/2025.03.17.643647

Model Organism: Zea mays

heavy metal stress maize domestication Zea mays positive selection Tb1

Detection of Mid-parent Heterosis Genes in Large-Scale Unreplicated RNA-Seq Experiments

Authors: Qi, Y., Liu, P.

Date: 2025-12-14 · Version: 1

DOI: 10.64898/2025.12.11.693571

Model Organism: Zea mays

mid-parent heterosis RNA-seq two-stage likelihood ratio test dispersion estimation negative binomial

Ethylene signal-driven plant-multitrophic synergy boosts crop performance

Authors: Baer, M., Zhong, Y., Yu, B., Tian, T., He, X., Gu, L., Huang, X., Gallina, E., Metzen, I. E., Bucher, M., Song, R., Gutjahr, C., SU, Z., Moya, Y., von Wiren, N., Zhang, L., Yuan, L., Shi, Y., Wang, S., Qi, W., Baer, M., Zhao, Z., Li, C., Li, X., Hochholdinger, F., Yu, P.

Date: 2025-11-29 · Version: 1

DOI: 10.1101/2025.11.28.690471

Model Organism: Zea mays

arbuscular mycorrhizal fungi lateral root development ethylene‑responsive transcription factors flavonoid metabolism Zea mays

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

KATANIN promotes cell elongation and division to generate proper cell numbers in maize organs

Authors: Martinez, S. E., Lau, K. H., Allsman, L. A., Irahola, C., Habib, C., Diaz, I. Y., Ceballos, I., Panteris, E., Bommert, P., Wright, A. J., Weil, C., Rasmussen, C.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680529

Model Organism: Zea mays

KATANIN microtubule severing Zea mays preprophase band cell elongation

Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis

Authors: Coleman, D., Iwase, A., Kawamura, A., Takebayashi, A., Jaeger, K. E., Peng, M., Kodama, Y., Favero, D. S., Takahashi, T., Ikeuchi, M., Suzuki, T., Ohama, N., Yamaguchi-Shinozaki, K., Wigge, P. A., De Veylder, L., Sugimoto, K.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679115

Model Organism: Arabidopsis thaliana

HSFA1 transcription factors wound-induced regeneration callus formation RNA-seq SUMOylation

Aphid-derived cross-kingdom RNA dynamics underpin maize resistance

Authors: Jiang, S., Zhang, Z., Liu, C., Zhu, Y., Kou, Y., Yang, P., Hu, Z., Wu, J., Wang, Y., Wan, F., Wu, G., Chen, Y.

Date: 2025-09-28 · Version: 1

DOI: 10.1101/2025.09.25.678037

Model Organism: Zea mays

aphid long non‑coding RNA cross‑kingdom effectors Zea mays RNA interference

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