Keywords: paralog processing, transcriptome reprogramming, ascorbate, Arabidopsis thaliana

Latest 246 Papers

Beyond binding motif: genomic context predicts transcription factor dependent regulation in Arabidopsis

Authors: Turchi, L., Lucas, J., Tichtinsky, G., Thierry-Mieg, N., Blanc-Mathieu, R., Parcy, F., Frenoy, A.

Date: 2025-05-27 · Version: 1

DOI: 10.1101/2025.05.23.655699

LEAFY transcription factor Arabidopsis thaliana transcription factor binding sites machine learning prediction regulatory genomics

Optimization of Bio-Orthogonal Non-Canonical Amino acid Tagging (BONCAT) for effective low-disruption labelling of Arabidopsis proteins in vivo

Authors: Hassan, N., Braun, S., Talasila, M., Fahlman, R., Uhrig, R. G.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.22.655591

Model Organism: Arabidopsis thaliana

BONCAT non‑canonical amino acids Arabidopsis thaliana protein synthesis labeling mass spectrometry

The JAW-TCP-FUL genetic axis triggers an early reorientation of cell anisotropy to initiate and drive fertilization-dependent fruit elongation in Arabidopsis

Authors: Sharma, A. N., G, K., V, A., S. S., N. S., Perumadaraya, A. J., Khadeeja, M., Pradeep, D., Basavaraju, S., Chandra, K., Rangarajan, A. N., Nath, U.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.20.655035

Model Organism: Arabidopsis thaliana

JAW‑TCP transcription factors FRUITFULL (FUL)parthenocarpy fruit elongation Arabidopsis thaliana

m6A RNA methylation attenuates thermotolerance in Arabidopsis

Authors: Shekhawat, K., Sheikh, A., Nawaz, K., Fatima, A., Alzayed, W., Nagaranjan, A. P., Hirt, H.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.22.655480

Model Organism: Arabidopsis thaliana

heat stress m6A RNA methylation thermotolerance Arabidopsis thaliana H3K4me3 histone modification

AtDjB3 regulates Hsc70-1-mediated expression of the heat shock genes and thermotolerance in Arabidopsis

Authors: Satheesh, G., Sengupta, I., Sahi, C.

Date: 2025-05-23 · Version: 1

DOI: 10.1101/2025.05.20.654906

Model Organism: Arabidopsis thaliana

heat shock response J-domain protein Hsp70 co‑chaperone thermotolerance Arabidopsis thaliana

The Role of SIAMESE in G2 Checkpoint Regulation in Arabidopsis thaliana

Authors: Schwall, M. A., Clark, F., Dale, R., Roeder, A. H. K., Kato, N., Larkin, J. C. C.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.16.654532

Model Organism: Arabidopsis thaliana

SIAMESE cyclin-dependent kinase inhibitor G2 phase regulation root meristem Arabidopsis thaliana

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

A simple method to efficiently generate structural variation in plants

Authors: Bechen, L. L., Ahsan, N., Bahrainwala, A., Gehring, M., Rajavasireddy, S.

Date: 2025-05-14 · Version: 2

DOI: 10.1101/2024.12.20.629831

Model Organism: Arabidopsis thaliana

structural variation etoposide treatment Arabidopsis thaliana long‑read sequencing phenotypic alteration

Two long non-coding RNAs, SVALKA and SVALNA, regulate CBF1 and CBF3 via multiple mechanisms

Authors: Rosenkranz, I., Mermet, S., Zacharaki, V., Kindgren, P.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653013

Model Organism: Arabidopsis thaliana

long non-coding RNA Arabidopsis thaliana cold stress CBF transcription factors RNAPII collision

Integrative analysis of plant responses to a combination of water deficit, heat stress and eCO2 reveals a role for OST1 and SLAH3 in regulating stomatal responses

Authors: Pelaez-Vico, M. A., Sinha, R., Ghani, A., Lopez-Climent, M. F., Joshi, T., Fritschi, F. B., Zandalinas, S. I., Mittler, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.07.652739

Model Organism: Arabidopsis thaliana

Global Change Factor combination stomatal aperture regulation Arabidopsis thaliana water deficit heat stress

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