Keywords: paralog processing, transcriptome reprogramming, ascorbate, gene expression, Tomato

Latest 14 Papers

Genome-wide Identification of the Laccase Gene Family in White Jute (Corchorus capsularis): Potential Targets for Lignin Engineering in Bast Fiber

Authors: Parida, S., Jha, D. K., Kumari, K., Pradhan, S., Dey, N., Majumder, S.

Date: 2025-12-29 · Version: 3

DOI: 10.1101/2024.07.17.603856

Model Organism: Corchorus capsularis

laccase lignification Corchorus capsularis gene expression microRNA regulation

Both conventionally and organically fertilized tomatoes maintain fruit quality through uncontrolled green peach aphid infestation, with a transcriptional shift towards catabolism

Authors: Labbancz, J., Gustafson, L., Andrews, P., Dhingra, A.

Date: 2025-12-16 · Version: 1

DOI: 10.64898/2025.12.14.694237

Model Organism: Solanum lycopersicum

Tomato Aphid infestation Organic fertilizer Transcriptome WGCNA co‑expression network

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Phosphoinositide-specific Phospholipase C 2 (SlPLC2) Facilitates Vesicle Formation and Modulates Immune Signaling in Tomato Phytophthora infestans Interactions

Authors: Perk, E. A., D'Ambrosio, J. M., Cerrudo, I., Robuschi, L., Juarez, M., Velez, P., Mary, V., Theumer, M., Segretin, M. E., Laxalt, A. M.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.21.677499

Model Organism: Solanum lycopersicum

Phosphoinositide-specific phospholipase C SlPLC2 Phytophthora infestans Tomato susceptibility factor

Impact of elevated temperature on immunity-related hormone signaling in tomato plants

Authors: Liu, K., Shivnauth, V., Castroverde, C. D. M.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.20.665745

Model Organism: Solanum lycopersicum

Tomato Pseudomonas syringae pv. tomato temperature effects defence hormone pathways gene expression

Transcriptomic prey-capture responses in convergently evolved carnivorous pitcher plants

Authors: Wakatake, T., Fukushima, K.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665073

Model Organism: Cephalotus follicularis

convergent evolution pitcher plant RNA‑seq gene expression digestive enzymes

Fragaria ananassa DAM4 expression correlates with vegetative growth during endodormancy breaking

Authors: David, S., Kersten, P., Cao, X., Marcelis, L. F. M., Verdonk, J. C.

Date: 2025-07-15 · Version: 1

DOI: 10.1101/2025.07.10.664089

Model Organism: Fragaria × ananassa

DAM3 DAM4 winter dormancy Fragaria × ananassa gene expression

An extended β-finger motif is a near-universal feature of kinase fusion proteins

Authors: Powell, O. R., Gilbert, D., Wulff, B. B. H.

Date: 2025-07-14 · Version: 1

DOI: 10.1101/2025.07.14.664643

Model Organism: Multi-species

kinase fusion proteins β‑finger motif Poaceae disease resistance gene expression

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

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