Keywords: paralog processing, transcriptome reprogramming, ascorbate, transcriptomic analysis, DNA methylation

Latest 27 Papers

Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1

DOI: 10.64898/2026.01.23.701354

Model Organism: Oryza sativa

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

Transcriptome and epigenome dynamics underpin cold stress priming in Arabidopsis

Authors: Sadykova, M., Saze, H.

Date: 2025-12-17 · Version: 1

DOI: 10.64898/2025.12.16.694799

Model Organism: Arabidopsis thaliana

stress priming DNA methylation cold stress Arabidopsis thaliana transcriptome dynamics

DNA methylation mediates transcriptional stability and transposon-driven trans-regulation under drought in wheat

Authors: Reynolds, I. J., Barratt, L. J., Harper, A. L.

Date: 2025-12-05 · Version: 1

DOI: 10.64898/2025.12.04.692301

Model Organism: Triticum aestivum

drought stress DNA methylation Triticum aestivum ROS1a demethylase transposable elements

DNA Methylation Dynamics Reveal Unique Plant Responses and Transcriptional Reprogramming to Combined Heat and Phosphate Deficiency Stress

Authors: Lozano-Enguita, A., Victoria Baca-Gonzalez, V., Morillas-Montaez, A., Pascual, J., Valledor, L., del Pozo, J. C., Caro, E.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689328

Model Organism: Arabidopsis thaliana

DNA methylation heat stress phosphate deficiency Arabidopsis thaliana whole-genome bisulfite sequencing

Key molecular and cellular events of table olive fruit abscission zone formation during natural maturation and after ethephon treatment

Authors: Wang, M., Santos, E., Eagle, S., Chernikova, A., Zhang, S., Tran, P., Marino, G., Jernstedt, J., Niederholzer, F., Wheeler-Dykes, B., Wilkop, T., Ferguson, L., Drakakaki, G.

Date: 2025-11-12 · Version: 1

DOI: 10.1101/2025.11.10.687704

Model Organism: Olea europaea

abscission zone Olea europaea transcriptomic analysis cell wall remodeling alkalinization

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Integrative epigenomic analysis uncovers asymmetry of enhancer activity in Brassica napus

Authors: Zanini, S. F., Rockenbach, K., Nguyen, A., Arslan, K., Yildiz, G., Snowdon, R., Golicz, A. A.

Date: 2025-10-31 · Version: 1

DOI: 10.1101/2025.10.31.685802

Model Organism: Brassica napus

cis-regulatory elements super-enhancers Brassica napus chromatin accessibility DNA methylation

DNA methylome responses to biotic and abiotic stress in Arabidopsis thaliana: A multi-study analysis

Authors: Behl, R., Gallo-Franco, J. J., Hazarika, R. R., Zhang, Z., Wilming, F., Schnitzler, J.-P., Lindermayr, C., Johannes, F.

Date: 2025-10-20 · Version: 1

DOI: 10.1101/2025.10.20.682861

Model Organism: Arabidopsis thaliana

DNA methylation stress response Arabidopsis thaliana transposable elements epimutations

Drought-Induced Epigenetic Memory in the cambium of Poplar Trees persists and primes future stress responses

Authors: DUPLAN, A., FENG, Y. Q., LASKAR, G., CAI, B. D., SEGURA, V., DELAUNAY, A., LE JAN, I., DAVIAUD, C., TOUMI, A., LAURANS, F., SOW, M. D., ROGIER, O., POURSAT, P., DURUFLE, H., JORGE, V., SANCHEZ, L., COCHARD, H., ALLONA, I., TOST, J., FICHOT, R., MAURY, S.

Date: 2025-10-15 · Version: 1

DOI: 10.1101/2025.10.14.681991

Model Organism: Populus spp.

drought stress memory DNA methylation Populus cambium epigenetic priming

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

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