Keywords: paralog processing, transcriptome reprogramming, deep learning, ethylene signaling

Latest 29 Papers

Type one protein phosphatases (TOPPs) catalyze EIN2 dephosphorylation to regulate ethylene signaling in Arabidopsis

Authors: Su, M., Qin, Q., Zhang, J., Li, Y., Ye, A., Wang, S., Hou, S.

Date: 2025-09-29 · Version: 1

DOI: 10.1101/2025.09.26.678716

Model Organism: Arabidopsis thaliana

TOPPs EIN2 ethylene signaling dephosphorylation salt tolerance

Botanic Spectrum Analyser: A Deep Learning GUI for Plant Image Segmentation in Hyperspectral and RGB Phenotyping

Authors: Walsh, J. J., Gorgu, L., Cavel, E., Poulain, V., Gutierrez, L., Mangina, E., Negrao, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.14.676080

Model Organism: Multi-species

plant phenotyping image segmentation U‑Net hyperspectral imaging deep learning

Phenotypic scoring of Canola Blackleg severity using machine learning image analysis

Authors: Hu, Q., Anderson, S. N., Gardner, S., Ernst, T. W., Koscielny, C. B., Bahia, N. S., Johnson, C. G., Jarvis, A. C., Hynek, J., Coles, N., Falak, I., Charne, D. R., Ruidiaz, M. E., Linares, J. N., Mazis, A., Stanton, D. J.

Date: 2025-07-22 · Version: 1

DOI: 10.1101/2025.07.17.665372

Model Organism: Multi-species

blackleg disease canola (Brassica spp.)deep learning image-based phenotyping disease severity scoring

A hierarchical abscission program regulates reproductive allocation in Prunus yedoensis and Prunus sargentii

Authors: Jeon, W.-T., Kim, J.-A., Cheon, A., Lee, S. S. Y., Kang, J., Lee, J.-M., Lee, Y.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.08.663657

Model Organism: Prunus yedoensis, Prunus sargentii

organ abscission abscission zone ethylene signaling reactive oxygen species Prunus reproductive biology

RegenPGC View: Semantic Segmentation of Perennial Groundcover Cropping Systems to Restore American Croplands

Authors: Meyering, B., Schlautman, B.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.03.663038

Model Organism: General

perennial groundcovers cover cropping deep learning convolutional neural network image‑based phenotyping

Ethylene Receptor Gain- and Loss-of-function Mutants Reveal an ETR1-dependent Transcriptional Network in Roots

Authors: White, M. G., Harkey, A., Muhlemann, J. K., Olex, A. L., Pfeffer, N. J., Houben, M., Binder, B., Muday, G. K.

Date: 2025-06-22 · Version: 3

DOI: 10.1101/2024.06.26.600793

Model Organism: Arabidopsis thaliana

ethylene signaling ETR1 root development gene regulatory network Arabidopsis

Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning

Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657584

Model Organism: Arabidopsis thaliana

Abscisic acid Arabidopsis thaliana deep learning promoter motifs ABF binding sites

EBSn, a robust synthetic reporter for monitoring ethylene responses in plants

Authors: Fernandez-Moreno, J.-P., Fenech, M., Yaschenko, A. E., Zhao, C., Neubauer, M., Davis, H. N., Marchi, A. J., Concannon, R., Keren-Keiserman, A., Reuveni, M., Levitsky, V. G., Oshchepkov, D., Dolgikh, V., Goldshmidt, A., Ascencio-Ibanez, J. T., Zemlyanskaya, E., Alonso, J. M., Stepanova, A. N.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.23.655144

Model Organism: Arabidopsis thaliana

ethylene signaling EIN3 transcription factor synthetic promoter GUS reporter assay Arabidopsis thaliana

Rapid ethylene-triggered protein complex remodeling in dark grown hypocotyls

Authors: Lee, Y., Park, H. L., Yoon, G. M., Szymanski, D. B.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654145

Model Organism: General

ethylene signaling protein multimerization hypocotyl development quantitative proteomics seedling morphogenesis

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

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