Keywords: paralog processing, transcriptome reprogramming, high-density SNP array, phylogenetic analysis

Latest 23 Papers

An Axiom SNP genotyping array for potato: development, evaluation and applications

Authors: Baig, N., Thelen, K., Ayenan, M. A. T., Hartje, S., Obeng-Hinneh, E., Zgadzaj, R., Renner, J., Muders, K., Truberg, B., Rosen, A., Prigge, V., Bruckmueller, J., Luebeck, J., Van Inghelandt, D., Stich, B.

Date: 2025-08-20 · Version: 1

DOI: 10.1101/2025.08.17.670748

Model Organism: Solanum tuberosum

high-density SNP array potato (Solanum tuberosum)genomic-assisted breeding GWAS polyphenol oxidase activity

Bioherbicidal activity and host range of Teratoramularia rumicicola strain TR4 isolated from Rumex crispus in Japan

Authors: Izumi, M., Sato, T.

Date: 2025-08-07 · Version: 1

DOI: 10.1101/2025.08.06.668795

Model Organism: Rumex spp.

Rumex weeds Teratoramularia rumicicola bioherbicide host specificity phylogenetic analysis

Large-Scale Multigenome-Wide Study Predicts the Existence of Transmembrane Phosphotransfer Proteins in Plant MSP Signaling Pathway

Authors: Lomin, S. N., Brenner, W. G., Savelieva, E. M., Arkhipov, D. V., Romanov, G. A.

Date: 2025-07-31 · Version: 1

DOI: 10.1101/2025.07.28.667123

Model Organism: Arabidopsis thaliana

transmembrane HPt proteins multistep phosphorelay phylogenetic analysis molecular modeling plant signaling

An NLP-inherited motif confers broad DNA-binding specificity to NIN in root nodule symbiosis

Authors: Nosaki, S., Noda, M., Onoda, H., Ito, M., Suzaki, T.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.20.665785

Model Organism: Lotus japonicus

NODULE INCEPTION FR motif DNA-binding specificity root nodule symbiosis phylogenetic analysis

Evolutionary origin and functional diversification of plant GBF1-type ARF guanine-nucleotide exchange factors

Authors: Singh, M. K., Lauster, T., Huhn, K., Richter, S., Kientz, M., Neher, R. A., Juergens, G.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657657

Model Organism: Arabidopsis thaliana

GBF1-type ARF‑GEF phylogenetic analysis ortho‑synteny polar recycling yeast two‑hybrid

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.

Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.13.648550

Model Organism: Solanum lycopersicum

bacterial spot Xanthomonas euvesicatoria population shift phylogenetic analysis copper resistance

The auxin gatekeepers: Evolution and diversification of the YUCCA family

Authors: Vijayanathan, M., Faryad, A., Abeywickrama, T. D., Christensen, J. M., Neilson, E. H.

Date: 2025-04-14 · Version: 1

DOI: 10.1101/2025.04.11.648386

Model Organism: Multi-species

YUCCA gene family indole-3-acetic acid phylogenetic analysis gene family diversification auxin biosynthesis

Archaeological Bolivian maize genomes suggest Inca cultural expansion augmented maize diversity in South America

Authors: Chen, H., Baetsen-Young, A., Thompson, A., Day, B., Madzima, T., Wasef, S., Rivera Casanovas, C., Lovis, W., Wrobel, G.

Date: 2025-04-01 · Version: 1

DOI: 10.1101/2025.03.31.646424

Model Organism: Zea mays

ancient maize biocultural selection Inca agriculture phylogenetic analysis seed traits

Pangenome insights into structural variation and functional diversification of barley CCT motif genes

Authors: Zhu, Z., Stein, N.

Date: 2025-03-19 · Version: 1

DOI: 10.1101/2025.03.19.643958

Model Organism: Hordeum vulgare

CCT motif genes barley pangenome gene family diversification VRN2 floral repressor phylogenetic analysis

PreviousPage 2 of 3Next