Keywords: paralog processing, transcriptome reprogramming, methylome, ascorbate, polyploidy

Latest 12 Papers

Chromosomal evolution and polyploidy dynamics in tribe Andropogoneae (Poaceae: Panicoideae): insights from phylogenomic reconstruction

Authors: Bispo, A. T. H., Silva, C., Welker, C. A. D.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.09.693223

Model Organism: General

chromosomal evolution Andropogoneae plastome sequencing Bayesian inference polyploidy

The origins and adaptive consequences of polyploidy in a dominant prairie grass

Authors: Phillips, A. R., AuBuchon-Elder, T., Barry, K. W., Stitzer, M. C., Buckler, E. S., Bukowski, R., Cameron, B., Cryan, E., Forrestel, E., Grabowski, P. P., Grimwood, J., Jenkins, J. W., Shu, S., Lipzen, A., Lovell, J. T., Minx, P., Porter, J., Runcie, D. E., Schmutz, J., Solomon, B., Stephens, J., Sun, Q., Williams, M., Yoshinaga, Y., Flint-Garcia, S., Romay, C., Kellogg, E. A., Ross-Ibarra, J.

Date: 2025-11-25 · Version: 1

DOI: 10.1101/2025.11.25.690567

Model Organism: Andropogon gerardi

polyploidy whole genome duplication Andropogon gerardi neopolyploid xeric adaptation

Methionine Triggers Metabolic, Transcriptional, and Epigenetic Reprogramming in Arabidopsis Leaves

Authors: Yerushalmy, Y., Dafni, M., Rabach, N., Hacham, Y., Amir, R.

Date: 2025-11-03 · Version: 1

DOI: 10.1101/2025.11.02.686087

Model Organism: Arabidopsis thaliana

methionine metabolism Arabidopsis thaliana DNA methylation transcriptome reprogramming stress hormone pathways

Leveraging Crop Wild Relatives and Ploidy Level for Climate-Resilient Annual Ryegrass

Authors: Mailhos, M. E., Timmers, J., Erickson, J., Caram, N., Messina, C. D., Rios, E. F.

Date: 2025-10-18 · Version: 1

DOI: 10.1101/2025.10.15.682691

Model Organism: Lolium multiflorum

polyploidy climate change Lolium multiflorum CO2 enrichment evapotranspiration

High-Quality Draft Genome Assemblies and Comparative Genomics of Three Bouteloua Species (Poaceae: Chloridoideae)

Authors: Ganesan, M. A., Hale, C. O., Romay, M. C., Buckler, E. S., Stitzer, M. C.

Date: 2025-10-17 · Version: 1

DOI: 10.1101/2025.10.15.682643

Model Organism: Multi-species

Bouteloua PacBio HiFi genome assembly polyploidy transposable elements

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Apomixis frequency in polyploid wild populations of Psidium cattleyanum f. lucidum (Myrteae, Myrtaceae)

Authors: Souza-Perez, M., Machado, R. M., Vaio, M., Borges, A., Hormaza, J. I., Speroni, G.

Date: 2025-08-22 · Version: 1

DOI: 10.1101/2025.08.18.670884

Model Organism: Psidium cattleyanum

apomixis polyploidy flow cytometric seed screen microsatellite genotyping population genetic structure

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

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