Keywords: paralog processing, transcriptome reprogramming, transcriptome, ascorbate, root development, CRISPR/Cas9

Latest 31 Papers

Fine-tuning quantitative agronomic traits by manipulating gene copy number in rice

Authors: Nomura, C., Kanzaki, H., Kanzaki, E., Shimizu, M., Oikawa, K., Utsushi, H., Ito, K., Sugimura, Y., Terauchi, R., Abe, A.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.16.654416

Model Organism: Oryza sativa

copy number variation OsMADS18 CRISPR/Cas9 rice (Oryza sativa)agronomic trait improvement

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

SnRK1.1 Coordinates Organ-Specific Growth-Defense Programs via Transcriptomic Rewiring in Arabidopsis thaliana

Authors: Kalachova, T., Muller, K., Lacek, J., Pree, S., Antonova, A., Bondarenko, O., Burketova, L., Retzer, K., Weckwerth, W.

Date: 2025-04-29 · Version: 1

DOI: 10.1101/2025.04.25.650715

Model Organism: Arabidopsis thaliana

SnRK1 KIN10 transcriptome reprogramming plant immunity tissue-specific signaling

A tRNA-gRNA multiplexing system for CRISPR genome editing in Marchantia polymorpha.

Authors: Frangedakis, E., Yelina, N., Eeda, S. K., Romani, F., Fragkidis, A., Haseloff, J., Hibberd, J.

Date: 2025-04-20 · Version: 1

DOI: 10.1101/2025.04.18.649274

Model Organism: Marchantia polymorpha

CRISPR/Cas9 multiplex gRNA expression tRNA-mediated processing Marchantia polymorpha thallus transformation

Molecular mechanisms underlying the determination of axillary bud fate and outgrowth into branch crown in strawberry

Authors: Alonso, M., Prevost, P., Potier, A., Martin, P. G., Caraglio, Y., Nicolas, M., Hernould, M., Rothan, C., Denoyes, B., Gaston, A.

Date: 2025-03-28 · Version: 1

DOI: 10.1101/2025.03.27.645709

Model Organism: Fragaria vesca

axillary bud fate stolon vs branch crown RNA-seq FveBRC1 CRISPR/Cas9

Chemical Inhibition of Splicing-Related Protein Kinases Reveals Phosphorylation-Driven Regulation of RNA Alternative Splicing in Arabidopsis Seedlings

Authors: Rodriguez Gallo, M. C., Murray, C., Kennedy, C., Talasila, M., Bhatt, D., Steyer, J., Glover, M., Uhrig, R. G.

Date: 2025-03-27 · Version: 1

DOI: 10.1101/2025.03.24.644839

Model Organism: Arabidopsis thaliana

SR protein kinases alternative splicing root development chemical inhibition phosphoproteomics

MYB93 regulates responses to environmental sulphur in Arabidopsis and tomato.

Authors: Cao, X., Wilkinson, H. B., Hutton, B., McMulkin, N., Graham, N. S., Etherington, R., Oliver, A. G., Clayton, C. M., Kaur, H., Coates, J. C.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.04.641362

Model Organism: Arabidopsis thaliana

sulfur nutrition AtMYB93 root development transcriptome analysis elemental analysis

Production of homozygous deletion mutants targeting fertilization regulator genes through multiplex genome editing

Authors: Yoshimura, A., Seo, Y., Kobayashi, S., Igawa, T.

Date: 2025-03-06 · Version: 1

DOI: 10.1101/2025.02.28.640930

Model Organism: Arabidopsis thaliana

CRISPR/Cas9 multiplex guide RNAs gene knockout Arabidopsis thaliana fertilization regulators

The ribosomal protein RPS6A modulates auxin signalling and root development in Arabidopsis

Authors: Pan, K., Hou, K., Kong, M., Tan, S.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.26.640312

Model Organism: Arabidopsis thaliana

RPS6A auxin signaling Arabidopsis thaliana root development PIN transporters

First Successful Targeted Mutagenesis Using CRISPR/Cas9 in Stably Transformed Grain Amaranth Tissue

Authors: Vollmer, S. K., Stetter, M. G., Hensel, G.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639339

Model Organism: Amaranthus hypochondriacus

CRISPR/Cas9 grain amaranth betalain biosynthesis orphan crop stable transformation

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