Keywords: paralog processing, transcriptomic analysis, CO2-fixing enzyme, Arabidopsis thaliana

Latest 252 Papers

Analysis of protein aging reveals rates of subcellular organelle renewal and selective post-translational modification in Arabidopsis

Authors: Tivendale, N., Liu, X., Millar, A. H.

Date: 2025-06-12 · Version: 1

DOI: 10.1101/2025.06.09.658759

protein aging pulse‑chase BONCAT Arabidopsis thaliana mass spectrometry proteomics oxidative post‑translational modifications

Drought stress modulates the molecular response of Arabidopsis plants to root-knot nematode infection

Authors: Refaiy, A., Lilley, C. J., Atkinson, N. J., Urwin, P. E.

Date: 2025-06-09 · Version: 1

DOI: 10.1101/2025.06.05.658137

Model Organism: Arabidopsis thaliana

combined biotic and abiotic stress drought stress root‑knot nematode (Meloidogyne incognita)RNA‑Seq transcriptomics Arabidopsis thaliana

Salicylic acid accumulation correlates with low anthocyanin production in Arabidopsis

Authors: Drs, M., Iakovenko, O., Orozco, J. S. H., Trhlinova, P. B., Markovice, V., Zarsky, V., Pecenkova, T., Janda, M.

Date: 2025-06-08 · Version: 1

DOI: 10.1101/2025.06.08.658514

Model Organism: Arabidopsis thaliana

salicylic acid anthocyanin biosynthesis Arabidopsis thaliana pattern‑triggered immunity anthocyanin vesicular inclusions

Cooperation between a root fungal endophyte and host-derived coumarin scopoletin mediates Arabidopsis iron nutrition

Authors: Van Dijck, L., Esposto, D., Huelsmann, C., Malisic, M., Piro, A., Giehl, R. F. H., Balcke, G. U., Tissier, A., Parker, J. E.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.04.657782

Model Organism: Arabidopsis thaliana

iron acquisition coumarins scopoletin Macrophomina phaseolina Arabidopsis thaliana

Unraveling the cis-regulatory code controlling abscisic acid-dependent gene expression in Arabidopsis using deep learning

Authors: Opdebeeck, H., Smet, D., Thierens, S., Minne, M., De Beukelaer, H., Zuallaert, J., Van Bel, M., Van Montagu, M., Degroeve, S., De Rybel, B., Vandepoele, K.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657584

Model Organism: Arabidopsis thaliana

Abscisic acid Arabidopsis thaliana deep learning promoter motifs ABF binding sites

Constitutive expression of full-length or partial of SOC1 genes for yield enhancement in tomato

Authors: Danial, G. H., Jaikham, J., Song, G.-q.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657751

Model Organism: Solanum lycopersicum

SOC1 tomato fruit yield heterologous gene expression branching transcriptomic analysis

Clade I TGA transcription factors are negative regulators of sulfate uptake and metabolism

Authors: Shukla, V., Basu, S., Koprivova, A., Ristova, D.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.06.658247

Model Organism: Arabidopsis thaliana

nitrate signaling sulfate uptake TGA transcription factors Arabidopsis thaliana pathogen interaction

GNC is a regulator of metabolic and productivity responses to elevated CO2 in Arabidopsis thaliana

Authors: Quebedeaux, J. C., Kannan, K., Marshall-Colon, A., Leakey, A. D.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656866

Model Organism: Arabidopsis thaliana

GATA transcription factor elevated CO₂ Arabidopsis thaliana carbon and nitrogen metabolism transcriptomic response

Voltage-dependent anion channels are mitophagy receptors mediating the recycling of depolarized mitochondria in Arabidopsis

Authors: MA, W., MA, J., ZHANG, K., ZHENG, X., WANG, P., FENG, L., MING, S., ZHUANG, X., ZHOU, J., Gao, C., KANG, B. H.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656919

Model Organism: Arabidopsis thaliana

mitophagy VDAC ATG8 Arabidopsis thaliana DNP uncoupler

Systematic measurements of dose-dependent responses for combinatorial treatments of SA and JA led to the development of transcriptomic biomarkers

Authors: Tomita, A., Maeda, T., Mori-Moriyama, N., Nomura, Y., Kurita, Y., Kashima, M., Betsuyaku, S., Nagano, A. J.

Date: 2025-06-01 · Version: 1

DOI: 10.1101/2025.05.29.656841

Model Organism: Arabidopsis thaliana

salicylic acid jasmonic acid hormone crosstalk transcriptomic biomarkers Arabidopsis thaliana

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