Keywords: paralog processing, transcriptomic analysis, CO2-fixing enzyme, heat stress, transcriptomics

Latest 67 Papers

Daily Heat Stress Induces Accumulation of Non-functional PSII-LHCII and Donor-side Limitation of PSI via Downregulation of the Cyt bf Complex in Arabidopsis thaliana

Authors: Laihonen, L., Tomberg, T., Vuorijoki, L., Mulo, P., Rantala, M.

Date: 2025-11-08 · Version: 1

DOI: 10.1101/2025.11.06.687104

Model Organism: Arabidopsis thaliana

heat stress thylakoid ultrastructure photosystem II cytochrome b6f Arabidopsis thaliana

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1

DOI: 10.1101/2025.10.20.683360

Model Organism: Pinus nigra

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Antifungal activity and mechanism of limonene against Fusarium oxysporum, a pathogen of potato dry rot

Authors: Xia, Q., Dong, P.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.06.675995

Model Organism: Fusarium oxysporum

limonene Fusarium oxysporum potato dry rot bio‑based fungicide transcriptomic analysis

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Model Organism: Pisum sativum

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

Sorghum embryos undergoing B chromosome elimination express B-variants of mitotic-related genes

Authors: Bojdova, T., Hlouskova, L., Holusova, K., Svacina, R., Hribova, E., Ilikova, I., Thiel, J., Kim, G., Pleskot, R., Houben, A., Bartos, J., Karafiatova, M.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679447

Model Organism: Sorghum purpureosericeum

DNA elimination B chromosome Sorghum purpureosericeum kinetochore proteins transcriptomics

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

Candidatus Phytoplasma-induced Retrogressive Morphogenesis in Sesame (Sesamum indicum L.): Tissue-Specific Metabolic and Transcriptomic Reprogramming

Authors: Banerjee, S., Gangopadhyay, G.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679221

Model Organism: Sesamum indicum

phytoplasma infection Sesamum indicum metabolomics transcriptomics tissue-specific response

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

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