Keywords: paralog processing, transcriptomic analysis, DNA methylation, Zea mays

Latest 50 Papers

Revisiting the Central Dogma: the distinct roles of genome, methylation, transcription, and translation on protein expression in Arabidopsis thaliana

Authors: Zhong, Z., Bailey, M., Kim, Y.-I., Pesaran-Afsharyan, N., Parker, B., Arathoon, L., Li, X., Rundle, C. A., Behrens, A., Nedialkova, D. D., Slavov, G., Hassani-Pak, K., Lilley, K. S., Theodoulou, F. L., Mott, R.

Date: 2025-03-31 · Version: 2

DOI: 10.1101/2025.01.08.631880

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana codon usage gene expression DNA methylation ribosome profiling

High-resolution transcriptional atlas of growing maize shoot organs throughout plant development under well-watered and drought conditions

Authors: Zhang, J., Verbraeken, L., Sprenger, H., Mertens, S., Wuyts, N., Cannoot, B., De Block, J., Demuynck, K., Natran, A., Maleux, K., Merchie, J., Crafts-Brandner, S., Vogel, J., Bruce, W., Inze, D., Maere, S., Nelissen, H.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.12.642568

Model Organism: Zea mays

Zea mays leaf and internode development drought stress spatiotemporal transcriptome atlas gene regulatory networks

Impaired methyl recycling induces substantial shifts in sulfur utilization in Arabidopsis

Authors: Tremblay, B. J.-M., Adeel, S. A., Saechao, M., Dong, Y., Andrianasolo, E., Steele, J. M., Traa, A., Yogadasan, N., Waduwara-Jayabahu, I., Katzenback, B. A., Hell, R., Wirtz, M., Moffatt, B. A.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.09.642221

Model Organism: General

sulfur metabolism methylthioadenosine nucleosidase methionine/S‑adenosylmethionine biosynthesis DNA methylation reproductive development

Fiber Bragg grating based sensing system for non-destructive root phenotyping using ResNet prediction

Authors: Binder, S., Hossain, K., Bucksch, A., Fok, M.

Date: 2025-02-28 · Version: 2

DOI: 10.1101/2024.09.17.613457

Model Organism: Zea mays

root architecture fiber Bragg grating real-time phenotyping deep learning Zea mays

Interactive effect of Moringa oleifera mediated green nanoparticles and arbuscular mycorrhizal fungi on growth, root system architecture, and nutrient uptake in maize (Zea mays L.)

Authors: Ain, Q. u., Hussain, H. A., Rahman, L., Zhang, Q., Rehman, A., Hussain, S., Uddin, S., Imran, A.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.23.639791

Model Organism: Zea mays

arbuscular mycorrhizal fungi green nanoparticles Zea mays iron oxide (FeO)zinc oxide (ZnO)

Arabidopsis REM transcription factors and GDE1 shape the DNA methylation landscape through the recruitment of RNA Polymerase IV transcription complexes.

Authors: Wu, Z., Xue, Y., Wang, S., Shih, Y.-H., Zhong, Z., Feng, S., Draper, J., Lu, A., Sha, J., Li, L., Wohlschlegel, J., Wu, K., Jacobsen, S. E.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.21.639493

Model Organism: Arabidopsis thaliana

DNA methylation 24‑nt siRNA REM transcription factors RNA polymerase IV Arabidopsis

Transcription factors instruct DNA methylation patterns in plant reproductive tissues

Authors: Xu, G., Chen, Y., Wang, F., Li, E., Law, J.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.21.639562

Model Organism: Arabidopsis thaliana

DNA methylation RNA‑directed DNA methylation (RdDM)REPRODUCTIVE MERISTEM transcription factors sex‑specific epigenetic regulation Arabidopsis thaliana

The dynamics of ACR and DNA methylation impact asymmetric subgenome dominance in allotriploid Brassica species

Authors: dai, c., Dou, S., quan, c.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.16.638486

Model Organism: Brassica napus

polyploidy subgenome dominance accessible chromatin regions DNA methylation Brassica allotriploids

Assembly and annotation of Solanum dulcamara and Solanum nigrum plant genomes, two nightshades with different susceptibilities to Ralstonia solanacearum

Authors: Franco Ortega, S., James, S. R., Gilbert, L., Hogg, K., Stevens, H., Daff, J., Friman, V. P., Harper, A. L.

Date: 2025-02-17 · Version: 1

DOI: 10.1101/2025.02.12.637948

Model Organism: Solanum dulcamara

Ralstonia solanacearum resistance Solanum dulcamara genome pattern recognition receptors auxin transport genes DNA methylation

A maize near-isogenic line population designed for gene discovery and characterization of allelic effects

Authors: Zhong, T., Mullens, A., Morales, L., Swarts, K., Stafstrom, W., He, Y., Sermons, S., Yang, Q., Lopez-Zuniga, L. O., Rucker, E., Thomason, W., Nelson, R., Jamann, T. M., Balint-Kurti, P., Holland, J. B.

Date: 2025-02-02 · Version: 1

DOI: 10.1101/2025.01.29.635337

Model Organism: Zea mays

Zea mays near‑isogenic lines genotyping‑by‑sequencing hidden Markov model QTL mapping

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