Keywords: paralog processing, transcriptomic analysis, RNA‑seq

Latest 19 Papers

Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1

DOI: 10.64898/2026.01.23.701354

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

Long-term salinity reveals genotype-specific transcriptional reprogramming in eggplant

Authors: Martina, M., Morabito, C., Moglia, A., Milani, A. M., Barchi, L., Acquadro, A., Comino, C., Secchi, F., Portis, E.

Date: 2026-01-14 · Version: 1

DOI: 10.64898/2026.01.13.699247

Model Organism: Solanum melongena

salinity tolerance eggplant (Solanum melongena)RNA‑seq genotype‑specific transcriptional response long‑term salt stress

A multi-omics approach to maize (Zea mays) tassel development

Authors: Hartmann, F., Mathioni, S., Kakrana, A., Meyers, B. C., Walbot, V., van der Linde, K.

Date: 2026-01-02 · Version: 1

DOI: 10.64898/2026.01.01.697295

Model Organism: Zea mays

Zea mays tassel development male inflorescence RNA‑seq small RNA sequencing miRNA dynamics

A high-quality genome assembly and integrative data portal (Phabase) for the Mesoamerican black bean (Phaseolus vulgaris cv. Negro Jamapa)

Authors: Akyol, T. Y., Villa-Rodriguez, E. D., Salgado, H., Pacheco, E., Trujillo-Roman, N., Fechete, L. I., Andersen, S. U., Formey, D., Montiel, J.

Date: 2025-12-11 · Version: 1

DOI: 10.64898/2025.12.09.693262

Model Organism: Phaseolus vulgaris

Phaseolus vulgaris Hi‑Fi PacBio genome assembly expression atlas RNA‑seq Phabase portal

Key molecular and cellular events of table olive fruit abscission zone formation during natural maturation and after ethephon treatment

Authors: Wang, M., Santos, E., Eagle, S., Chernikova, A., Zhang, S., Tran, P., Marino, G., Jernstedt, J., Niederholzer, F., Wheeler-Dykes, B., Wilkop, T., Ferguson, L., Drakakaki, G.

Date: 2025-11-12 · Version: 1

DOI: 10.1101/2025.11.10.687704

Model Organism: Olea europaea

abscission zone Olea europaea transcriptomic analysis cell wall remodeling alkalinization

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Bacillus velezensis EU07 suppresses Fusarium graminearum via transcriptomic reprogramming

Authors: Baysal, O., Jimenez-quiros, C., Cevher-Keskin, B., Tor, M.

Date: 2025-10-10 · Version: 1

DOI: 10.1101/2025.10.10.681611

Model Organism: Fusarium graminearum

Bacillus velezensis Fusarium graminearum biocontrol RNA‑seq differentially expressed genes

Antifungal activity and mechanism of limonene against Fusarium oxysporum, a pathogen of potato dry rot

Authors: Xia, Q., Dong, P.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.06.675995

Model Organism: Fusarium oxysporum

limonene Fusarium oxysporum potato dry rot bio‑based fungicide transcriptomic analysis

Pervasive splicing in a plant DNA virus

Authors: Pott, D. M., Gao, M., Shi, C., Wang, L., Medina-Puche, L., Yagci, Z., Acatay, S., Zhang, J., Gonzalo, L., Merchante, C., Gu, L., Lozano-Duran, R.

Date: 2025-10-02 · Version: 1

DOI: 10.1101/2025.10.01.679800

Model Organism: Solanum lycopersicum

TYLCV geminivirus splicing spliceosome viral pathogenicity RNA‑seq

Microscopical and molecular characterization of the infection cycle of Phytophthora betacei during disease development on tree tomato (Solanum betaceum).

Authors: Palacios, N. G., Gonzalez-Tobon, J., Buitrago, M. C., Bautista, D., Gonzalez, L. N., Toquica, M. C., Mideros, M. F., Schornack, S., Restrepo, S.

Date: 2025-09-17 · Version: 1

DOI: 10.1101/2025.09.11.675658

Model Organism: Solanum betaceum

Phytophthora betacei Solanum betaceum infection cycle hemibiotrophic transition RNA‑seq

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