Keywords: paralog processing, transcriptomic analysis, SpATS, transcriptome analysis, transcriptomics, proteomics

Latest 65 Papers

Molecular characterization of flower bud dormancy under constrained temperatures unveils a shallow dormancy stage induced by cold deprivation

Authors: Fouche, M., Bonnet, H., Prigent, S., Wenden, B.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.27.661981

winter dormancy temperature stress sweet cherry transcriptomics shallow dormancy phase

Zinc deficiency induces spatially distinct responses in roots and impacts ZIP12-dependent zinc homeostasis in Arabidopsis

Authors: Thiebaut, N., Persson, D. P., Sarthou, M., Stevenne, P., Bosman, B., Carnol, M., Fanara, S., Verbruggen, N., Hanikenne, M.

Date: 2025-06-30 · Version: 1

DOI: 10.1101/2025.06.26.661794

Model Organism: Arabidopsis thaliana

zinc deficiency root apical meristem ZIP12 transcriptomics ionomics

MdBRC1 and MdFT2 Interaction Fine-Tunes Bud Break Regulation in Apple

Authors: Gioppato, H. A., Estevan, J., Al Bolbol, M., Soriano, A., Garighan, J., Jeong, K., Georget, C., Soto, D. G., El Khoury, S., Falavigna, V. d. S., George, S., Perales, M., Andres, F.

Date: 2025-06-24 · Version: 1

DOI: 10.1101/2025.06.20.660803

Model Organism: Malus domestica

bud dormancy MdBRC1 MdFT2 transcriptomic analysis protein interaction

Proteomic analysis reveals distinct germination strategies in polymorphic fruits of Haloxylon ammodendron

Authors: Wang, Y. Z., Chen, Z. W., Zhang, H. X., Wang, Z., Jiang, M. L., Yimingniyazi, A., Ren, C.

Date: 2025-06-23 · Version: 1

DOI: 10.1101/2025.06.17.660099

Model Organism: Haloxylon ammodendron

fruit polymorphism seed germination stress tolerance proteomics Haloxylon ammodendron

Dynamic changes to the plastoglobule lipidome and proteome in heat-stressed maize

Authors: Devadasu, E., Susanto, F. A., Schilmiller, A. L., Johnny, C., Lundquist, P. K.

Date: 2025-06-19 · Version: 1

DOI: 10.1101/2025.06.13.659543

Model Organism: Zea mays

heat stress plastoglobules lipid composition Zea mays proteomics

Constitutive expression of full-length or partial of SOC1 genes for yield enhancement in tomato

Authors: Danial, G. H., Jaikham, J., Song, G.-q.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657751

Model Organism: Solanum lycopersicum

SOC1 tomato fruit yield heterologous gene expression branching transcriptomic analysis

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

Physiological characterization in a somaclonal mutant for fruit shape derived from persimmon 'Hiratanenashi'

Authors: Horiuchi, A., Matsuzaki, R., Onoue, N., Ushijima, K., Kubo, Y., Akagi, T., Minamikawa, M. F.

Date: 2025-05-19 · Version: 1

DOI: 10.1101/2025.05.19.654774

Model Organism: Diospyros kaki

fruit shape persimmon (Diospyros kaki)elliptic Fourier descriptor transcriptome analysis WOX13

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

SNRK3.15 is a crucial component of the sulfur deprivation response in Arabidopsis thaliana

Authors: Apodiakou, A., Heyneke, E., Alseekh, S., Pinsorn, P., Metzger, S., Kopriva, S., Schulze, W., Hoefgen, R., Whitcomb, S. J.

Date: 2025-05-03 · Version: 1

DOI: 10.1101/2025.04.29.651231

Model Organism: Arabidopsis thaliana

sulfate deprivation CIPK14/SNRK3.15 Arabidopsis thaliana kinase signaling proteomics

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