Keywords: paralog processing, transcriptomic analysis, phylogenetic analysis, CO2-fixing enzyme, SUMOylation

Latest 29 Papers

Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1

DOI: 10.64898/2026.01.23.701354

Model Organism: Oryza sativa

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

Membrane-binding domains define REMORIN phylogeny and provide a predicted structural basis for distinctive membrane nano-environments

Authors: Biermann, D., Gronnier, J.

Date: 2025-12-23 · Version: 1

DOI: 10.64898/2025.12.22.695504

Model Organism: General

REMORIN proteins C-terminal domain membrane nano-organization phylogenetic analysis structural bioinformatics

CHLOROPLAST GENOME AND PHYLOGENETIC ANALYSIS OF KATMON (Dillenia philippinensis Rolfe), A PHILIPPINE ENDEMIC FRUIT

Authors: Lucero, J. J. M., Munoz, J. A. M., Aglibot, L. Y., Cardona, D. E. M., Gueco, L. S., Manalang, A. P., Villanueva, J. C., Alonday, R. C. S.

Date: 2025-11-27 · Version: 1

DOI: 10.1101/2025.11.26.690882

Model Organism: Dillenia philippinensis

Dillenia philippinensis chloroplast genome Illumina NovaSeqX phylogenetic analysis simple sequence repeats

Rubisco Dark Inhibition in Angiosperms Shows a Complex Distribution Pattern

Authors: Nehls-Ramos, C., Carmo-Silva, E., Orr, D. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.20.689527

Model Organism: Multi-species

Rubisco dark inhibition flowering plants phylogenetic analysis photosynthetic regulation CO2-fixing enzyme

Key molecular and cellular events of table olive fruit abscission zone formation during natural maturation and after ethephon treatment

Authors: Wang, M., Santos, E., Eagle, S., Chernikova, A., Zhang, S., Tran, P., Marino, G., Jernstedt, J., Niederholzer, F., Wheeler-Dykes, B., Wilkop, T., Ferguson, L., Drakakaki, G.

Date: 2025-11-12 · Version: 1

DOI: 10.1101/2025.11.10.687704

Model Organism: Olea europaea

abscission zone Olea europaea transcriptomic analysis cell wall remodeling alkalinization

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Antifungal activity and mechanism of limonene against Fusarium oxysporum, a pathogen of potato dry rot

Authors: Xia, Q., Dong, P.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.06.675995

Model Organism: Fusarium oxysporum

limonene Fusarium oxysporum potato dry rot bio‑based fungicide transcriptomic analysis

Six New Species and Two Reinstatements of Viola (Violaceae) from China

Authors: Huang, Y., Fan, Q.

Date: 2025-10-03 · Version: 1

DOI: 10.1101/2025.10.02.679011

Model Organism: Viola

Viola new species phylogenetic analysis ITS GPI

Wounding activates the HSFA1 transcription factors to promote cellular reprogramming in Arabidopsis

Authors: Coleman, D., Iwase, A., Kawamura, A., Takebayashi, A., Jaeger, K. E., Peng, M., Kodama, Y., Favero, D. S., Takahashi, T., Ikeuchi, M., Suzuki, T., Ohama, N., Yamaguchi-Shinozaki, K., Wigge, P. A., De Veylder, L., Sugimoto, K.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679115

Model Organism: Arabidopsis thaliana

HSFA1 transcription factors wound-induced regeneration callus formation RNA-seq SUMOylation

Genome-wide Identification, Structural Features and Single-Cell Expression Atlas of the Carbonic Anhydrase Gene Family in Maize (Zea mays L.)

Authors: Gao, Y., Zhao, C.

Date: 2025-09-21 · Version: 1

DOI: 10.1101/2025.09.21.677582

Model Organism: Zea mays

carbonic anhydrases maize single-cell RNA‑seq phylogenetic analysis stress resilience

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