Keywords: paralog processing, transcriptomic analysis, phylogenetic analysis, autophagy

Latest 41 Papers

A dual component system instructs membrane hydrolysis during the final stages of plant autophagy

Authors: Castets, J., Buridan, M., Toboso Moreno, I., Sanchez de Medina Hernandez, V., Gomez, R. E., Dittrich-Domergue, F., Lupette, J., Chambaud, C., Pascal, S., Ibrahim, T., Bozkurt, T. O., Dagdas, Y., Domergue, F., Joubes, J., Minina, A. E. A., Bernard, A.

Date: 2025-08-02 · Version: 1

DOI: 10.1101/2025.08.01.668046

Model Organism: Arabidopsis thaliana

autophagy phospholipase Arabidopsis thaliana vacuolar lumen LCAT3/LCAT4

Large-Scale Multigenome-Wide Study Predicts the Existence of Transmembrane Phosphotransfer Proteins in Plant MSP Signaling Pathway

Authors: Lomin, S. N., Brenner, W. G., Savelieva, E. M., Arkhipov, D. V., Romanov, G. A.

Date: 2025-07-31 · Version: 1

DOI: 10.1101/2025.07.28.667123

Model Organism: Arabidopsis thaliana

transmembrane HPt proteins multistep phosphorelay phylogenetic analysis molecular modeling plant signaling

Gain and loss of gene function shaped the nickel hyperaccumulation trait in Noccaea caerulescens

Authors: Belloeil, C., Garcia de la Torre, V. S., Contreras Aguilera, R., Kupper, H., Lopez-Roques, C., Iampetro, C., Vandecasteele, C., Klopp, C., Launay-Avon, A., Leemhuis, W., Yamjabok, J., van den Heuvel, J., Aarts, M. G. M., Quintela Sabaris, C., Thomine, S., MERLOT, S.

Date: 2025-07-25 · Version: 1

DOI: 10.1101/2025.07.22.664359

Model Organism: Noccaea caerulescens

nickel hyperaccumulation Noccaea caerulescens genome assembly transcriptomic analysis metal transporters

An NLP-inherited motif confers broad DNA-binding specificity to NIN in root nodule symbiosis

Authors: Nosaki, S., Noda, M., Onoda, H., Ito, M., Suzaki, T.

Date: 2025-07-23 · Version: 1

DOI: 10.1101/2025.07.20.665785

Model Organism: Lotus japonicus

NODULE INCEPTION FR motif DNA-binding specificity root nodule symbiosis phylogenetic analysis

ATG8i Autophagy activation is mediated by cytosolic Ca2+ under osmotic stress in Arabidopsis thaliana

Authors: Castillo-Olamendi, L., Gutierrez-Martinez, J., Jimenez-Nopala, G., Galindo, A., Barrera-Ortiz, S., Rosas-Santiago, P., Cordoba, E., Leon, P., Porta, H.

Date: 2025-07-02 · Version: 1

DOI: 10.1101/2025.07.02.662772

Model Organism: General

autophagy osmotic stress Ca²⁺ signaling ATG8i ER‑phagy

MdBRC1 and MdFT2 Interaction Fine-Tunes Bud Break Regulation in Apple

Authors: Gioppato, H. A., Estevan, J., Al Bolbol, M., Soriano, A., Garighan, J., Jeong, K., Georget, C., Soto, D. G., El Khoury, S., Falavigna, V. d. S., George, S., Perales, M., Andres, F.

Date: 2025-06-24 · Version: 1

DOI: 10.1101/2025.06.20.660803

Model Organism: Malus domestica

bud dormancy MdBRC1 MdFT2 transcriptomic analysis protein interaction

Evolutionary origin and functional diversification of plant GBF1-type ARF guanine-nucleotide exchange factors

Authors: Singh, M. K., Lauster, T., Huhn, K., Richter, S., Kientz, M., Neher, R. A., Juergens, G.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657657

Model Organism: Arabidopsis thaliana

GBF1-type ARF‑GEF phylogenetic analysis ortho‑synteny polar recycling yeast two‑hybrid

Constitutive expression of full-length or partial of SOC1 genes for yield enhancement in tomato

Authors: Danial, G. H., Jaikham, J., Song, G.-q.

Date: 2025-06-06 · Version: 1

DOI: 10.1101/2025.06.03.657751

Model Organism: Solanum lycopersicum

SOC1 tomato fruit yield heterologous gene expression branching transcriptomic analysis

The autophagy-related genes AtATG5 and AtATG7 influence reserve mobilisation and responses to ABA during seed germination in Arabidopsis thaliana

Authors: Contreras, E., Sanchez-Vicente, I., Pastor-Mora, E., Aylon-Rodriguez, M., Gonzalez-Ceballos, M., Delgado-Gutierrez, M. A., Lorenzo, O., Vicente-Carbajosa, J., Iglesias-Fernandez, R.

Date: 2025-04-21 · Version: 2

DOI: 10.1101/2024.05.15.593177

Model Organism: Arabidopsis thaliana

autophagy Arabidopsis thaliana ABA signaling ATG5/ATG7 ABI5

Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.

Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.13.648550

Model Organism: Solanum lycopersicum

bacterial spot Xanthomonas euvesicatoria population shift phylogenetic analysis copper resistance

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