Keywords: paralog processing, transcriptomic analysis, transcriptomics, deep learning, SWI3, Arabidopsis thaliana

Latest 289 Papers

The transcriptional mechanism behind Mimosa pudica leaf-folding in response to mechanical disturbance

Authors: Buti, M., Checcucci, A., Vergata, C., Renna, L., Pollastri, S., Loreto, F., Mancuso, S., Martinelli, F.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665295

Model Organism: Mimosa pudica

Mimosa pudica mechanical stress chlorophyll fluorescence transcriptomics stress‑responsive gene expression

Somatic mobility of transposons is explosive and shaped by distinct integration biases in Arabidopsis thaliana

Authors: Ambreen, H., Leduque, B., Quadrana, L., Slotkin, R. K., Bousios, A., Nuetzmann, H.-W.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.14.664700

Model Organism: Arabidopsis thaliana

transposable elements somatic transposition Arabidopsis thaliana chromatin integration bias epigenetic mutants

TOC1 supresses PAMP-triggered immunity in Arabidopsis

Authors: Fraser, O. J. P., Spoel, S. H., van Ooijen, G.

Date: 2025-07-18 · Version: 1

DOI: 10.1101/2025.07.16.665052

Model Organism: Arabidopsis thaliana

circadian clock PAMP-triggered immunity flg22 TOC1 overexpression Arabidopsis thaliana

Plant Mobile Domain protein-DNA motif modules counteract Polycomb silencing to stabilize gene expression

Authors: Pelissier, T., Jarry, L., Olivier, M., Dajoux, G., Pouch-Pelissier, M.-N., Courtois, C., Descombin, J., Picault, N., Moissiard, G., Mathieu, O.

Date: 2025-07-18 · Version: 2

DOI: 10.1101/2024.09.27.615353

Model Organism: Arabidopsis thaliana

Polycomb group H3K27me3 PMD‑C proteins Arabidopsis thaliana DNA motif antagonism

Brassinosteroid controls leaf air space patterning non-cell autonomously by promoting epidermal growth

Authors: Fitzsimons, J. M., Rock, A. B., De Falbe, R. L., Fox, S., Whitewoods, C. D.

Date: 2025-07-17 · Version: 1

DOI: 10.1101/2025.07.14.664710

Model Organism: Arabidopsis thaliana

intercellular air spaces brassinosteroid signaling epidermal growth palisade mesophyll Arabidopsis thaliana

Loss of Nucleotide Sugar Transporter (AtNST) gene function in the Golgi membranes impairs pollen development and embryo sac progression in Arabidopsis thaliana

Authors: Diman, R., Malathi, P., Srinivasan, R., Bhat, S. R., Yelam, S.

Date: 2025-07-15 · Version: 1

DOI: 10.1101/2025.07.10.664101

Model Organism: Arabidopsis thaliana

nucleotide sugar transporter Arabidopsis thaliana gametophyte development gene mutation complementation

Enhancement of Arabidopsis growth by Enterobacter sp. SA187 under elevated CO2 is dependent on ethylene signalling activation and primary metabolism reprogramming

Authors: Ilyas, A., Mauve, C., Pateyron, S., Paysant-Le Roux, C., Bigeard, J., Hodges, M., de Zelicourt, A.

Date: 2025-07-09 · Version: 1

DOI: 10.1101/2025.07.08.663752

Model Organism: Arabidopsis thaliana

Enterobacter sp. SA187 elevated CO2 Arabidopsis thaliana phytohormone signaling transcriptomics

β-sheet stabilization of the island domain underlies ligand-induced LRR-RP activation of plant immune signaling

Authors: Snoeck, S., Zhang, L., Studer, V., Kim, G., Fernandez-Fernandez, A. D., Nuernberger, T., zipfel, c.

Date: 2025-07-09 · Version: 1

DOI: 10.1101/2025.07.07.663532

Model Organism: Arabidopsis thaliana

LRR receptor proteins pattern‑triggered immunity AI‑based structural prediction island domain loopout Arabidopsis thaliana

Integrative Multi-Omics Analysis Reveals Stress-Specific Molecular Architectures in Soybean under Drought and Rust Infection

Authors: Husein, G., Castro-Moretti, F. R., Prado, M., Amorim, L., Mazzafera, P., Canales, J., Monteiro-Vitorello, C. B.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.07.663534

Model Organism: Glycine max

Asian soybean rust drought stress transcriptomics metabolomics co-expression network

RegenPGC View: Semantic Segmentation of Perennial Groundcover Cropping Systems to Restore American Croplands

Authors: Meyering, B., Schlautman, B.

Date: 2025-07-06 · Version: 1

DOI: 10.1101/2025.07.03.663038

Model Organism: General

perennial groundcovers cover cropping deep learning convolutional neural network image‑based phenotyping

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