Keywords: paralog processing, transcriptomics, CO2-fixing enzyme, transcriptomic analysis, plant immunity

Latest 61 Papers

Sorghum embryos undergoing B chromosome elimination express B-variants of mitotic-related genes

Authors: Bojdova, T., Hlouskova, L., Holusova, K., Svacina, R., Hribova, E., Ilikova, I., Thiel, J., Kim, G., Pleskot, R., Houben, A., Bartos, J., Karafiatova, M.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679447

Model Organism: Sorghum purpureosericeum

DNA elimination B chromosome Sorghum purpureosericeum kinetochore proteins transcriptomics

Cellular energy sensor SnRK1 suppresses salicylic acid-dependent and -independent defenses and bacterial resistance in Arabidopsis

Authors: Jie, L., Sanagi, M., Yasuda, S., Yamada, K., Ejima, S., Sugisaki, A., Takagi, J., Nomoto, M., Xin, X., Tada, Y., Saijo, Y., Sato, T.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.10.01.679707

Model Organism: Arabidopsis thaliana

SnRK1 salicylic acid signaling plant immunity energy status high humidity

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

Candidatus Phytoplasma-induced Retrogressive Morphogenesis in Sesame (Sesamum indicum L.): Tissue-Specific Metabolic and Transcriptomic Reprogramming

Authors: Banerjee, S., Gangopadhyay, G.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.29.679221

Model Organism: Sesamum indicum

phytoplasma infection Sesamum indicum metabolomics transcriptomics tissue-specific response

A Key Role for S-Nitrosylation in Immune Regulation and Development in the Liverwort Marchantia polymorpha

Authors: Goodrich, J.

Date: 2025-09-30 · Version: 1

DOI: 10.1101/2025.09.29.679193

Model Organism: Marchantia polymorpha

Nitric oxide S-nitrosylation GSNOR Marchantia polymorpha plant immunity

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

NUDIX Hydrolases Target Specific Inositol Pyrophosphates and Regulate Phosphate Homeostasis and Bacterial Pathogen Susceptibility in Arabidopsis

Authors: Schneider, R., Lami, K., Prucker, I., Stolze, S. C., Strauss, A., Schmidt, J. M., Bartsch, S. M., Langenbach, K., Lange, E., Ritter, K., Furkert, D., Faiss, N., Kumar, S., Hasan, M. S., Makris, A., Krusenbaum, L., Wege, S., Belay, Y. Z., Kriescher, S., The, J., Harings, M., Grundler, F., Ried-Lasi, M. K., Schoof, H., Gaugler, P., Kamleitner, M., Fiedler, D., Nakagami, H., Giehl, R. F., Lahaye, T., Bhattacharjee, S., Jessen, H. J., Gaugler, V., Schaaf, G.

Date: 2025-08-12 · Version: 2

DOI: 10.1101/2024.10.18.619122

Model Organism: Arabidopsis thaliana

Inositol pyrophosphates NUDIX hydrolases phosphate homeostasis iron homeostasis plant immunity

Cell-type specific gating of gene regulatory modules as a hallmark of early immune responses in Arabidopsis leaves

Authors: Wang, S., Bezrukov, I., Wu, P.-J., Gauss, H., Timmermans, M., Weigel, D.

Date: 2025-08-01 · Version: 1

DOI: 10.1101/2025.08.01.668105

Model Organism: Arabidopsis thaliana

single-cell RNA sequencing Arabidopsis thaliana plant immunity PTI and ETI WRKY transcription factors

A sublethal drought and rewatering time course reveals intricate patterning of responses in the annual Arabidopsis thaliana

Authors: Fitzek-Campbell, E., Psaroudakis, D., Weisshaar, B., Junker, A., Braeutigam, A.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666782

Model Organism: Arabidopsis thaliana

drought stress Arabidopsis thaliana transcriptomics high‑throughput phenotyping biomarker transcripts

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