Keywords: paralog processing, transcriptomics, barley, genome assembly

Latest 51 Papers

The transcriptional mechanism behind Mimosa pudica leaf-folding in response to mechanical disturbance

Authors: Buti, M., Checcucci, A., Vergata, C., Renna, L., Pollastri, S., Loreto, F., Mancuso, S., Martinelli, F.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665295

Mimosa pudica mechanical stress chlorophyll fluorescence transcriptomics stress‑responsive gene expression

Post-Domestication selection of MKK3 Shaped Seed Dormancy and End-Use Traits in Barley

Authors: Jorgensen, M. E., Vequaud, D., Wang, Y., Andersen, C. B., Bayer, M., Box, A., Braune, K., Cai, Y., Chen, F., Antonio Cuesta-Seijo, J., Dong, H., Fincher, G. B., Gojkovic, Z., Huang, Z., Jaegle, B., Kale, S. M., Krsticevic, F., Roux, P.-M. L., Lozier, A., Lu, Q., Mascher, M., Murozuka, E., Nakamura, S., Simmelsgaard, M. U., Pedas, P. R., Pin, P., Sato, K., Spannagl, M., Rasmussen, M. W., Russell, J., Schreiber, M., Thomsen, H. C., Tulloch, S., Thomsen, N. W., Voss, C., Skadhauge, B., Stein, N., Waugh, R., Willerslev, E., Dockter, C.

Date: 2025-07-16 · Version: 1

DOI: 10.1101/2025.07.11.664137

Model Organism: Hordeum vulgare

grain dormancy pre-harvest sprouting MKK3 MAPK pathway barley

Enhancement of Arabidopsis growth by Enterobacter sp. SA187 under elevated CO2 is dependent on ethylene signalling activation and primary metabolism reprogramming

Authors: Ilyas, A., Mauve, C., Pateyron, S., Paysant-Le Roux, C., Bigeard, J., Hodges, M., de Zelicourt, A.

Date: 2025-07-09 · Version: 1

DOI: 10.1101/2025.07.08.663752

Model Organism: Arabidopsis thaliana

Enterobacter sp. SA187 elevated CO2 Arabidopsis thaliana phytohormone signaling transcriptomics

Integrative Multi-Omics Analysis Reveals Stress-Specific Molecular Architectures in Soybean under Drought and Rust Infection

Authors: Husein, G., Castro-Moretti, F. R., Prado, M., Amorim, L., Mazzafera, P., Canales, J., Monteiro-Vitorello, C. B.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.07.663534

Model Organism: Glycine max

Asian soybean rust drought stress transcriptomics metabolomics co-expression network

Medicago truncatula CORYNE modulates inflorescence meristem branching, nutrient signaling, and arbuscular mycorrhizal symbiosis

Authors: Orosz, J., Lin, E. X., Torres Ascurra, Y. C., Kappes, M., Lindsay, P. L., Bashyal, S., Everett, H., Gautam, C. K., Jackson, D., Mueller, L. M.

Date: 2025-07-02 · Version: 3

DOI: 10.1101/2024.09.20.614181

Model Organism: Medicago truncatula

CLAVATA signaling CRN pseudokinase arbuscular mycorrhizal symbiosis Meristem branching transcriptomics

Molecular characterization of flower bud dormancy under constrained temperatures unveils a shallow dormancy stage induced by cold deprivation

Authors: Fouche, M., Bonnet, H., Prigent, S., Wenden, B.

Date: 2025-07-01 · Version: 1

DOI: 10.1101/2025.06.27.661981

Model Organism: Prunus avium

winter dormancy temperature stress sweet cherry transcriptomics shallow dormancy phase

Zinc deficiency induces spatially distinct responses in roots and impacts ZIP12-dependent zinc homeostasis in Arabidopsis

Authors: Thiebaut, N., Persson, D. P., Sarthou, M., Stevenne, P., Bosman, B., Carnol, M., Fanara, S., Verbruggen, N., Hanikenne, M.

Date: 2025-06-30 · Version: 1

DOI: 10.1101/2025.06.26.661794

Model Organism: Arabidopsis thaliana

zinc deficiency root apical meristem ZIP12 transcriptomics ionomics

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

Model Organism: Salvia hispanica

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Whole-genome sequencing reveals the molecular basis of sex determination in the dioecious wild yam Dioscorea tokoro

Authors: Kudoh, A., Natsume, S., Sugihara, Y., Kato, H., Abe, A., Oikawa, K., Shimizu, M., Itoh, K., Tsujimura, M., Takano, Y., Sakai, T., Adachi, H., Ohta, A., Ohtsu, M., Ishizaki, T., Terachi, T., Terauchi, R.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.28.650915

Model Organism: Dioscorea tokoro

dioecy sex determination XY system Dioscorea tokoro genome assembly

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