Keywords: paralog processing, transcriptomics, spatial transcriptomics, Medicago truncatula

Latest 50 Papers

The GTPase ARFA1 interactor Cullin 3 Substrate-adaptor Protein 1 (CSP1) positively modulates nodulation

Authors: Ripodas, C., Eylenstein, A., Cretton, M., Rivero, C., Zanetti, M. E., Blanco, F. A.

Date: 2025-12-02 · Version: 1

DOI: 10.64898/2025.11.30.691430

Model Organism: Medicago truncatula

ARF GTPase MtCSP1 Cullin3 ubiquitin ligase Medicago truncatula root nodule symbiosis

Evaluating effects of elevated and accelerated NPQ relaxation on yield, physiology and transcription in soybean

Authors: Singh, D., de Souza, A. P., Doran, L., Hansen, J., Burgess, S. J.

Date: 2025-11-20 · Version: 1

DOI: 10.1101/2025.11.19.689310

Model Organism: Glycine max

photosynthetic efficiency elevated CO2 transgenic soybean VPZ construct transcriptomics

Spatiotemporal regulation of arbuscular mycorrhizal symbiosis at cellular resolution

Authors: Chancellor, T., Ferreras-Garrucho, G., Akmakjian, G. Z., Montero, H., Bowden, S. L., Hope, M., Wallington, E., Bhattacharya, S., Korfhage, C., Bailey-Serres, J., Paszkowski, U.

Date: 2025-11-02 · Version: 1

DOI: 10.1101/2025.10.31.685811

Model Organism: Oryza sativa

arbuscular mycorrhizal symbiosis spatial transcriptomics TRAP-seq arbuscule development nutrient transport

SWI3 regulates male sex determination in Marchantia polymorpha

Authors: Quiles, M. L., Raval, P. K., Rensing, S. A., Gould, S. B.

Date: 2025-10-30 · Version: 1

DOI: 10.1101/2025.10.29.685095

Model Organism: Marchantia polymorpha

SWI3 chromatin regulation Marchantia polymorpha gametangiophore development transcriptomics

Unravelling the intraspecific variation in drought responses in seedlings of European black pine (Pinus nigra J.F. Arnold)

Authors: Ahmad, M., Hammerbacher, A., Priemer, C., Ciceu, A., Karolak, M., Mader, S., Olsson, S., Schinnerl, J., Seitner, S., Schoendorfer, S., Helfenbein, P., Jakub, J., Breuer, M., Espinosa, A., Caballero, T., Ganthaler, A., Mayr, S., Grosskinsky, D. K., Wienkoop, S., Schueler, S., Trujillo-Moya, C., van Loo, M.

Date: 2025-10-21 · Version: 1

DOI: 10.1101/2025.10.20.683360

Model Organism: Pinus nigra

drought tolerance Pinus nigra metabolomics transcriptomics phenotyping

Rhizobial motility preference in root colonization of Medicago truncatula

Authors: Delers, A., Bennion, A., Guillory, A., Frances, L., Krol, E., Bonnafous, F., Mendioni, L., Serrania, J., Peyraud, R., Fournier, J., de Carvalho-Niebel, F., Becker, A.

Date: 2025-10-14 · Version: 1

DOI: 10.1101/2025.10.12.681932

Model Organism: Medicago truncatula

infection thread Sinorhizobium meliloti flagella-independent motility rhizobactin 1021 Medicago truncatula

Phylogenomic challenges in polyploid-rich lineages: Insights from paralog processing and reticulation methods using the complex genus Packera (Asteraceae: Senecioneae)

Authors: Moore-Pollard, E. R., Ellestad, P., Mandel, J.

Date: 2025-10-13 · Version: 2

DOI: 10.1101/2025.09.14.676143

Model Organism: Multi-species

phylogenomic discordance polyploidy paralog processing Packera historical biogeography

Trichoderma afroharzianum behaves differently with respect to the host transcriptome and microbial communities under varying iron availability in pea plants

Authors: Kabir, A. H., Thapa, A., Ara Saiful, S. A., Talukder, S. K.

Date: 2025-10-06 · Version: 1

DOI: 10.1101/2025.10.05.680589

Model Organism: Pisum sativum

Trichoderma afroharzianum T22 iron deficiency pea (Pisum sativum)transcriptomics root microbiome

Sorghum embryos undergoing B chromosome elimination express B-variants of mitotic-related genes

Authors: Bojdova, T., Hlouskova, L., Holusova, K., Svacina, R., Hribova, E., Ilikova, I., Thiel, J., Kim, G., Pleskot, R., Houben, A., Bartos, J., Karafiatova, M.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679447

Model Organism: Sorghum purpureosericeum

DNA elimination B chromosome Sorghum purpureosericeum kinetochore proteins transcriptomics

Predicting complex phenotypes using multi-omics data in maize

Authors: Creach, M., Webster, B., Newton, L., Turkus, J., Schnable, J., Thompson, A., VanBuren, R.

Date: 2025-10-01 · Version: 1

DOI: 10.1101/2025.09.30.679283

Model Organism: Zea mays

multi-omics trait prediction transcriptomics phenomics genotype-by-environment interaction

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