Keywords: paralog processing, transcriptomics, spatial transcriptomics, phylogenetic analysis, ethylene signaling

Latest 76 Papers

Thermotolerance in Chia (Salvia hispanica L.) is Mediated by Rapid Heat-Induced Transcriptomic Reprogramming and Lipid Remodelling in Leaves

Authors: Zare, T., Kehelpannala, C., Bhatnagar, A., Rupasinghe, T., Ebert, B., Fournier-Level, A., Roessner, U.

Date: 2025-06-02 · Version: 1

DOI: 10.1101/2025.05.30.656991

heat stress Salvia hispanica transcriptomics lipidomics calcium signaling

EBSn, a robust synthetic reporter for monitoring ethylene responses in plants

Authors: Fernandez-Moreno, J.-P., Fenech, M., Yaschenko, A. E., Zhao, C., Neubauer, M., Davis, H. N., Marchi, A. J., Concannon, R., Keren-Keiserman, A., Reuveni, M., Levitsky, V. G., Oshchepkov, D., Dolgikh, V., Goldshmidt, A., Ascencio-Ibanez, J. T., Zemlyanskaya, E., Alonso, J. M., Stepanova, A. N.

Date: 2025-05-28 · Version: 1

DOI: 10.1101/2025.05.23.655144

Model Organism: Arabidopsis thaliana

ethylene signaling EIN3 transcription factor synthetic promoter GUS reporter assay Arabidopsis thaliana

Rapid ethylene-triggered protein complex remodeling in dark grown hypocotyls

Authors: Lee, Y., Park, H. L., Yoon, G. M., Szymanski, D. B.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654145

Model Organism: General

ethylene signaling protein multimerization hypocotyl development quantitative proteomics seedling morphogenesis

Arabidopsis lines with modified ascorbate concentrations reveal a link between ascorbate and auxin biosynthesis

Authors: Fenech, M., Zulian, V., Moya-Cuevas, J., Arnaud, D., Morilla, I., Smirnoff, N., Botella, M. A., Stepanova, A. N., Alonso, J. M., Martin-Pizarro, C., Amorim-Silva, V.

Date: 2025-05-16 · Version: 1

DOI: 10.1101/2025.05.15.654287

Model Organism: Arabidopsis thaliana

ascorbate Arabidopsis thaliana auxin biosynthesis redox homeostasis transcriptomics

Imputation integrates single-cell and spatial gene expression data to resolve transcriptional networks in barley shoot meristem development

Authors: Demesa-Arevalo, E., Dorpholz, H., Vardanega, I., Maika, J. E., Pineda-Valentino, I., Eggels, S., Lautwein, T., Kohrer, K., Schnurbusch, T., von Korff, M., Usadel, B., Simon, R.

Date: 2025-05-11 · Version: 1

DOI: 10.1101/2025.05.09.653223

Model Organism: Hordeum vulgare

Barley (Hordeum vulgare)inflorescence meristems single-cell RNA sequencing spatial transcriptomics developmental gene regulation

Comparative multi-omics profiling of Gossypium hirsutum and Gossypium barbadense fibers at high temporal resolution reveals key differences in polysaccharide composition and associated glycosyltransferases

Authors: Swaminathan, S., Lee, Y., Grover, C. E., DeTemple, M. F., Mugisha, A. S., Sichterman, L. E., Yang, P., Xie, J., Wendel, J. F., Szymanski, D. B., Zabotina, O. A.

Date: 2025-04-30 · Version: 1

DOI: 10.1101/2025.04.26.650795

Model Organism: Multi-species

cotton fiber development polysaccharide composition glycome profiling transcriptomics glycosyltransferases

An ERF transcription factor StPTI5, a novel regulator of endophyte community maintenance in potato

Authors: Lukan, T., Kraigher, B., Pogacar, K., Stare, K., Grubar Kovacic, T., Zagorscak, M., Petek, M., Stefanic, P., Vozelj, A., Levak, V., Mahkovec Povalej, T., Garcia, J. M., Pozo, M. J., Mandic-Mulec, I., Gruden, K.

Date: 2025-04-24 · Version: 1

DOI: 10.1101/2025.04.24.650297

Model Organism: Solanum tuberosum

PTI5 ethylene signaling plant immunity beneficial microbes Solanum tuberosum

ERF transcription factor regulons underpin growth-defence trade-off under acute heat stress in rice seedlings

Authors: Nair, A. U., Vishwakarma, S., Guha, T., Kadumuri, R. V., Fritschi, F. B., Chavali, S., Allu, A. D.

Date: 2025-04-22 · Version: 1

DOI: 10.1101/2025.04.21.649784

Model Organism: Oryza sativa

heat stress Oryza sativa seedling transcriptomics ethylene responsive factors phytohormone treatment

A transcriptional dissection of the petty spurge (Euphorbia peplus L.) reproductive structure

Authors: Johnson, A. R., Bao, A., Frank, M. H.

Date: 2025-04-17 · Version: 2

DOI: 10.1101/2024.05.06.592779

Model Organism: Euphorbia peplus

cyathium transcriptomics floral development genes SEP1 paralogs Euphorbia peplus

Rapid population flux in bacterial spot xanthomonads during a transition in dominance between two genotypes in consecutive tomato production seasons and identification of a new species Xanthomonas oklahomensis sp. nov.

Authors: Johnson, B., Subedi, A., Damicone, J., Goss, E., Jones, J. B., Jibrin, M. O.

Date: 2025-04-16 · Version: 1

DOI: 10.1101/2025.04.13.648550

Model Organism: Solanum lycopersicum

bacterial spot Xanthomonas euvesicatoria population shift phylogenetic analysis copper resistance

PreviousPage 6 of 8Next