Keywords: paralog processing, transcriptomics, transcriptome reprogramming, Arabidopsis thaliana

Latest 274 Papers

Stationary phloem proteins and their effects on viruses, aphids, and cyst nematodes in Arabidopsis

Authors: Damen, J., Willig, J.-J., Chikwature, N., Haan, J. d., Kenter, J. N., Dicke, M., van Oers, M. M., Smant, G., Matsumura, E. E., Kloth, K. J.

Date: 2025-09-16 · Version: 1

DOI: 10.1101/2025.09.10.675357

Model Organism: Arabidopsis thaliana

phloem immunity SLI1 RTM proteins Arabidopsis thaliana plant‑attacker interactions

Cell wall integrity and elicitor peptide signaling modulate antimicrobial defense in Arabidopsis via jasmonic acid

Authors: Morton, R. N., Fleischberger, L., Debnath, J., Biermann, D., Mühlbauer, S., Rajendran, A., Kunz, H.-H., Gronnier, J., Gigli-Bisceglia, N., Engelsdorf, T.

Date: 2025-09-12 · Version: 1

DOI: 10.1101/2025.09.09.675042

Model Organism: Arabidopsis thaliana

THESEUS1 cell wall integrity camalexin Arabidopsis thaliana Pep3 signaling

The RING-finger domain of Arabidopsis RMR functions as an E3 ligase essential for post-Golgi trafficking

Authors: Chen, S., Zeng, Y., Wong, H., Chen, Y., Yang, L., Luo, F., Gao, C., Jiang, L., Wong, K.-B.

Date: 2025-09-11 · Version: 2

DOI: 10.1101/2024.12.17.628466

Model Organism: Arabidopsis thaliana

RMR sorting receptors RING-H2 domain E3 ubiquitin ligase Golgi trafficking Arabidopsis thaliana

A multigenic quantitative trait locus underlies natural variation in Arabidopsis thaliana root system architecture and transcriptional responses to microbiota-derived Pseudomonas

Authors: Copeland, C., Logemann, E., Malisic, M., Amrhein, A., Valisi, A., Schulze-Lefert, P.

Date: 2025-09-05 · Version: 1

DOI: 10.1101/2025.09.03.673899

Model Organism: Arabidopsis thaliana

Arabidopsis thaliana Pseudomonas root colonization natural variation quantitative trait locus (QTL)exocyst subunit EXO70E2

PIF4-mediated regulation of H2O2 homeostasis controls Arabidopsis seedling thermomorphogenesis

Authors: Raipuria, R. K., Saini, K., Panda, M. K., Dwivedi, A., Ranjan, A.

Date: 2025-09-05 · Version: 1

DOI: 10.1101/2025.09.02.673620

Model Organism: Arabidopsis thaliana

thermomorphogenesis H2O2 homeostasis PIF4 catalase genes Arabidopsis thaliana

Long-term Exposure to Methyl Jasmonate Increases Myrosinases TGG1 and TGG2 in Arabidopsis coi1 and myc2,3,4 Mutants

Authors: Mirzaei, M., Poormassalehgoo, A., Endo, K., Goto-Yamada, S., Dubas, E., Yamada, K.

Date: 2025-09-05 · Version: 2

DOI: 10.1101/2024.04.03.587911

Model Organism: Arabidopsis thaliana

methyl jasmonate TGG1/TGG2 non‑canonical JA signaling myrosin cells Arabidopsis thaliana

Light on its feet: Acclimation to high and low diurnal light is flexible in Chlamydomonas reinhardtii

Authors: Dupuis, S., Chastain, J. L., Han, G., Zhong, V., Gallaher, S. D., Nicora, C. D., Purvine, S. O., Lipton, M. S., Niyogi, K. K., Iwai, M., Merchant, S. S.

Date: 2025-09-02 · Version: 1

DOI: 10.1101/2025.08.28.672467

Model Organism: Chlamydomonas reinhardtii

photoprotection diurnal light acclimation thylakoid ultrastructure transcriptomics proteomics

The role of FRUITFULL controlling cell cycle during early flower development revealed by time series snRNA-seq experiments.

Authors: Chen, P., Xu, X., Smaczniak, C., Desvoyes, B., Gutierrez, C., Sablowski, R., Kaufmann, K., Muino, J. M.

Date: 2025-09-01 · Version: 1

DOI: 10.1101/2025.08.31.673337

Model Organism: Arabidopsis thaliana

single-nucleus RNA sequencing Arabidopsis thaliana flower development cell cycle regulation KRP2

Utilization of Arabidopsis E3 ubiquitin decoys high-throughput yeast screen platform to dissect the ubiquitin-mediated circadian clock regulation

Authors: Tu, Y.-T., Chen, C.-A., Gendron, J., Lee, C.-M.

Date: 2025-09-01 · Version: 1

DOI: 10.1101/2025.08.31.673341

Model Organism: Arabidopsis thaliana

protein ubiquitination E3 ubiquitin ligases yeast two-hybrid circadian clock Arabidopsis thaliana

Deciphering the role of autophagy under Cd toxicity in Arabidopsis thaliana

Authors: Collado-Arenal, A. M., Perez-Gordillo, F. L., Espinosa, J., Moreno-Diaz, R., Shabala, S., Romero-Puertas, M. C., Sandalio, L. M.

Date: 2025-08-31 · Version: 1

DOI: 10.1101/2025.08.27.672299

Model Organism: Arabidopsis thaliana

cadmium stress autophagy Arabidopsis thaliana ATG5 metal ion homeostasis

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