Keywords: paralog processing, transcriptomics, transcriptome reprogramming, Arabidopsis thaliana

Latest 274 Papers

The Arabidopsis TIRome informs the design of artificial TIR (Toll/interleukin-1 receptor) domain proteins

Authors: Bayless, A. M., Song, L., Sorbello, M., Ogden, S. C., Todd, T. S., Flint, A., Maruta, N., Tulu, J., Drenichev, M., Ntoukakis, V., Ve, T., Mobli, M., Wan, L., Liu, Q., Dangl, J. L., Kobe, B., Grant, M., Nishimura, M. T.

Date: 2025-03-17 · Version: 1

DOI: 10.1101/2025.03.15.643477

Model Organism: Arabidopsis thaliana

TIR domain Arabidopsis thaliana immune signaling BB‑loop synthetic TIR engineering

Fast activated outward cation channel activation allows H+-ATPase and anion channel reactivation upon strong depolarization in young root hairs of Arabidopsis thaliana

Authors: Bouteau, f., Reboutier, D., Dauphin, A.

Date: 2025-03-14 · Version: 1

DOI: 10.1101/2025.03.14.643228

Model Organism: Arabidopsis thaliana

root hair ion transport plasma membrane outward current voltage clamp Arabidopsis thaliana

Two distinct oscillatory auxin signals define the plasticity of lateral rooting in Arabidopsis thaliana

Authors: Ren, C., Bodendorf, J., Moreno-Risueno, M. A., Kleine-Vehn, J.

Date: 2025-03-14 · Version: 2

DOI: 10.1101/2024.08.16.608248

Model Organism: Arabidopsis thaliana

auxin oscillations lateral root pre‑branch sites Arabidopsis thaliana light signaling environmental integration

Delay in flowering time in Col-0 under water deficit and in ddc triple knockout mutant

Authors: Vatov, E., Gechev, T.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.11.642597

Model Organism: Arabidopsis thaliana

cytosine methylation flowering time water deficit Arabidopsis thaliana BBX16/BBX17

Cysteine signaling in plant pathogen response

Authors: Moormann, J., Heinemann, B., Angermann, C., Koprivova, A., Armbruster, U., Kopriva, S., Hildebrandt, T. M.

Date: 2025-03-13 · Version: 1

DOI: 10.1101/2025.03.13.642987

Model Organism: Arabidopsis thaliana

cysteine homeostasis plant immune signaling proteome response Arabidopsis thaliana Pseudomonas syringae

Designer antisense circRNAGFP reduces GFP protein abundance in Arabidopsis protoplasts in a sequence-specific manner, independent of RNAi pathways

Authors: Hossain, M., Pfafenroth, C., Nasfi, S., Sede, A. R., Imani, J., Secic, E., Galli, M., Schaefer, P., Bindereif, A., Heinlein, M., Ladera, M., Kogel, K.-H.

Date: 2025-03-12 · Version: 2

DOI: 10.1101/2023.11.20.567890

Model Organism: Arabidopsis thaliana

circular RNA Arabidopsis thaliana targeted gene regulation RNAi‑independent pattern‑triggered immunity

Powdery mildew exploits host plastoglobuli functions via DGAT3 and FBN2 for proliferation

Authors: Xue, H., Kemmer, C. R., Choi, E. H., Iwai, M., Niyogi, K. K., Wildermuth, M. C.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.04.641535

Model Organism: Arabidopsis thaliana

plastoglobuli powdery mildew Arabidopsis thaliana Fibrillin 2 (FBN2)effector interaction

An affordable and non-invasive validated machine-aided phenotyping pipeline identifies phenotypic variation of stress resilience in alkaline calcareous soil across the life cycle in Arabidopsis thaliana

Authors: Knopf, M., Bauer, P.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.02.641020

Model Organism: Arabidopsis thaliana

Alkaline calcareous soil Arabidopsis thaliana PlantEye multispectral phenotyping Rostette size Leaf chlorosis

High and low exogenous nitrate concentrations produce distinct calcium signatures in Arabidopsis roots

Authors: Shrivastava, S., Singh, D., Zielinski, R. E., Marshall-Colon, A.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.03.641058

Model Organism: Arabidopsis thaliana

calcium signaling nitrate response Arabidopsis thaliana root hair calcium dynamics GCaMP6s imaging

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

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