Keywords: paralog processing, transcriptomics, untargeted metabolomics

Latest 46 Papers

Untargeted Metabolomics Reveals Organ-Specific and Extraction-Dependent Metabolite Profiles in Endemic Tajik Species Ferula violacea Korovin

Authors: Mavlonazarova, S., Acosta, K., Abzalimov, R., Satorov, S., Dushenkov, V.

Date: 2025-08-27 · Version: 1

DOI: 10.1101/2025.08.24.671964

Ferula violacea untargeted metabolomics terpenoids alkaloids daucane sesquiterpenoids

DECREASE IN DNA METHYLATION 1-mediated epigenetic regulation maintains gene expression balance required for heterosis in Arabidopsis thaliana

Authors: Matsuo, K., Wu, R., Yonechi, H., Murakami, T., Takahashi, S., Kamio, A., Akter, M. A., Kamiya, Y., Nishimura, K., Matsuura, T., Tonosaki, K., Shimizu, M., Ikeda, Y., Kobayashi, H., Seki, M., Dennis, E. S., Fujimoto, R.

Date: 2025-08-26 · Version: 1

DOI: 10.1101/2025.08.21.671646

Model Organism: Arabidopsis thaliana

heterosis DNA methylation DDM1 Arabidopsis thaliana transcriptomics

Early root-root interactions weaken foliar defense responses against Septoria tritici blotch in a durum wheat varietal mixture

Authors: MATHIEU, L., CHLOUP, A., MARTY, S., SAVAJOLS, J., ROUVEYROL, C., VALLS, J., PETRIACQ, P. G. J., MOREL, J.-B., METEIGNIER, L.-V., BALLINI, E.

Date: 2025-08-02 · Version: 1

DOI: 10.1101/2025.07.30.667709

Model Organism: Triticum durum

durum wheat Septoria tritici blotch root architecture defense response timing untargeted metabolomics

Unravelling Induced Resistance in Strawberry: Distinct Metabolomic Signatures Define Cultivar-Specific Resistance to Botrytis cinerea

Authors: Murena, C., Pastor, V., Fernandes, T. R., Carvalho, S. M. P., Luna, E.

Date: 2025-08-01 · Version: 1

DOI: 10.1101/2025.07.29.667391

Model Organism: Fragaria x ananassa

Botrytis cinerea induced resistance Fragaria x ananassa elicitor treatment untargeted metabolomics

Impact of Long-Term Cover Cropped Organic Farming Practices on the Development of Disease Suppressive Soils

Authors: Ghile, N. T., Bardhan, S., Lin, C.-H.

Date: 2025-07-30 · Version: 1

DOI: 10.1101/2025.07.28.667314

Model Organism: General

disease-suppressive soil organic farming cover crops untargeted metabolomics rhizosphere chemistry

A sublethal drought and rewatering time course reveals intricate patterning of responses in the annual Arabidopsis thaliana

Authors: Fitzek-Campbell, E., Psaroudakis, D., Weisshaar, B., Junker, A., Braeutigam, A.

Date: 2025-07-27 · Version: 1

DOI: 10.1101/2025.07.25.666782

Model Organism: Arabidopsis thaliana

drought stress Arabidopsis thaliana transcriptomics high‑throughput phenotyping biomarker transcripts

Transcriptomics uncovers molecular mechanisms underlying salt-inhibited root growth in Festuca rubra

Authors: Lan, B., Ru, D., Du, F. K., Yin, K.

Date: 2025-07-26 · Version: 1

DOI: 10.1101/2025.07.22.665687

Model Organism: Festuca rubra

salt stress root growth inhibition Festuca rubra transcriptomics hormone signaling

The transcriptional mechanism behind Mimosa pudica leaf-folding in response to mechanical disturbance

Authors: Buti, M., Checcucci, A., Vergata, C., Renna, L., Pollastri, S., Loreto, F., Mancuso, S., Martinelli, F.

Date: 2025-07-21 · Version: 1

DOI: 10.1101/2025.07.17.665295

Model Organism: Mimosa pudica

Mimosa pudica mechanical stress chlorophyll fluorescence transcriptomics stress‑responsive gene expression

Enhancement of Arabidopsis growth by Enterobacter sp. SA187 under elevated CO2 is dependent on ethylene signalling activation and primary metabolism reprogramming

Authors: Ilyas, A., Mauve, C., Pateyron, S., Paysant-Le Roux, C., Bigeard, J., Hodges, M., de Zelicourt, A.

Date: 2025-07-09 · Version: 1

DOI: 10.1101/2025.07.08.663752

Model Organism: Arabidopsis thaliana

Enterobacter sp. SA187 elevated CO2 Arabidopsis thaliana phytohormone signaling transcriptomics

Integrative Multi-Omics Analysis Reveals Stress-Specific Molecular Architectures in Soybean under Drought and Rust Infection

Authors: Husein, G., Castro-Moretti, F. R., Prado, M., Amorim, L., Mazzafera, P., Canales, J., Monteiro-Vitorello, C. B.

Date: 2025-07-08 · Version: 1

DOI: 10.1101/2025.07.07.663534

Model Organism: Glycine max

Asian soybean rust drought stress transcriptomics metabolomics co-expression network

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