Keywords: paralog processing, transcriptomics, wheat, local adaptation

Latest 58 Papers

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

Authors: Pelosi, J., Davenport, R., Kuo, L.-Y., Gray, L. N., Dant, A. J., Kim, E. H., Li, F.-W., Dlugosch, K. M., Krabbenhoft, T. J., Barbazuk, W. B., Sessa, E. B.

Date: 2025-03-07 · Version: 1

DOI: 10.1101/2025.03.06.640867

Model Organism: Lygodium microphyllum

Lygodium microphyllum alternation of generations transcriptomics methylome invasive species

Phytochrome A is required for light-inhibited germination of Aethionema arabicum seed

Authors: Merai, Z., Xu, F., Hajdu, A., Kozma-Bognar, L., Dolan, L.

Date: 2025-02-28 · Version: 1

DOI: 10.1101/2025.02.26.640300

Model Organism: Aethionema arabicum

negative photoblastic germination phytochrome A Aethionema arabicum high‑irradiance response local adaptation

Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan

Authors: Ujino-Ihara, T., Uchiyama, K., Kanetani, S., Suyama, Y., Tsumura, Y.

Date: 2025-02-25 · Version: 1

DOI: 10.1101/2025.02.22.639673

Model Organism: Cryptomeria japonica

local adaptation transcriptome analysis weighted gene co‑expression network analysis (WGCNA)SNP differentiation defense response genes

Population-scale gene expression analysis reveals the contribution of expression diversity to the modern wheat improvement

Authors: Zhang, Z., Ma, S., Yin, M., Zhao, C., Zhao, X., yu, Y., Wang, H., Li, X., Si, Y., Niu, J., Xie, J., Wang, L., Wu, J., Zhang, Y., Zheng, Q., Zheng, S., Jiang, N., Liu, X., Ling, H.-Q., He, F.

Date: 2025-02-23 · Version: 1

DOI: 10.1101/2025.02.18.638840

Model Organism: Triticum aestivum

gene expression variation pan‑genome eQTL analysis introgression wheat

Transcriptomic insights into the role of miR394 in the regulation of flowering time in Arabidopsis thaliana

Authors: Belen, F., Bernardi, Y., Reutemann, A., Vegetti, A., Dotto, M. C.

Date: 2025-02-20 · Version: 1

DOI: 10.1101/2025.02.15.638417

Model Organism: Arabidopsis thaliana

miR394 flowering time Arabidopsis thaliana transcriptomics lncRNA

Remote sensing reveals inter- and intraspecific variation in riparian cottonwood (Populus spp) response to drought

Authors: Seeley, M., Wiebe, B. C., Gehring, C. A., Hultine, K., Posch, B. C., Cooper, H. F., Schaefer, E. A., Bock, B. M., Abraham, A. J., Moran, M. E., Keith, A., Allan, G. J., Scull, M., Whitham, T. G., Martin, R. E., Asner, G. P., Doughty, C.

Date: 2025-02-19 · Version: 1

DOI: 10.1101/2025.02.17.638728

Model Organism: Populus fremontii

drought response leaf-level VSWIR spectroscopy UAV thermal imaging genotype-by-environment interaction local adaptation

Plant plasticity in the face of climate change - CO2 offsetting effects to warming and water deficit in wheat. A review.

Authors: Gawinowski, M., Chenu, K., Deswarte, J.-C., Launay, M., Bancal, M.-O.

Date: 2025-02-12 · Version: 1

DOI: 10.1101/2025.02.10.637370

Model Organism: Triticum aestivum

elevated CO2 heat stress drought wheat plasticity indices

TAC-C uncovers open chromatin interaction in crops and SPL-mediated photosynthesis regulation

Authors: Kang, J., Zhang, Z., Lin, X., Liu, F., Song, Y., Zhao, P., Lin, Y., Luo, X., Li, X., Li, Y., Wang, W., Liu, C., Xu, S., Liu, X., Xiao, J.

Date: 2025-02-10 · Version: 1

DOI: 10.1101/2025.02.10.637364

Model Organism: Multi-species

cis-regulatory elements chromatin loops TAC-C photosynthesis regulation wheat

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