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Initiation of asexual reproduction by the AP2/ERF gene GEMMIFER in Marchantia polymorpha

Authors: Takahashi, G., Yamaya, S., Romani, F., Bonter, I., Ishizaki, K., Shimamura, M., Kiyosue, T., Haseloff, J., Hirakawa, Y.

Date: 2026-01-16 · Version: 1
DOI: 10.64898/2026.01.16.699827

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study identifies the AP2/ERF transcription factor GEMMIFER (MpGMFR) as essential for asexual reproduction in the liverwort Marchantia polymorpha, showing that loss of MpGMFR via genome editing or amiRNA abolishes gemma and gemma cup formation, while dexamethasone‑induced activation triggers their development. Transient strong activation of MpGMFR initiates gemma initial cells at the meristem, which mature into functional gemmae, indicating MpGMFR is both necessary and sufficient for meristem‑derived asexual propagule formation.

MpGMFR AP2/ERF gemmae Marchantia polymorpha asexual reproduction

Do stomatal movements have a limited dynamic range?

Authors: Muraya, F., Siqueira, J. A., Very, A.-A., Roelfsema, R.

Date: 2025-12-26 · Version: 1
DOI: 10.64898/2025.12.22.695892

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined the roles of AtKUP2, AtKUP6, AtKUP8, and GORK potassium transport proteins in guard cell function by performing gas-exchange measurements on mature Arabidopsis leaves. Loss of KUP2/6/8 reduced stomatal conductance, whereas a GORK loss‑of‑function mutant showed increased conductance, yet the magnitude of light‑ and ABA‑induced transpiration changes remained similar across genotypes, suggesting a limited dynamic range for rapid stomatal movements that relies on small ionic osmolytes.

stomatal conductance potassium transporters GORK channel AtKUP2/6/8 Arabidopsis

A SABATH family enzyme regulates development via the gibberellin-related pathway in the liverwort Marchantia polymorpha

Authors: Kawamura, S., Shimokawa, E., Ito, M., Nakamura, I., Kanazawa, T., Iwano, M., Sun, R., Yoshitake, Y., Yamaoka, S., Yamaguchi, S., Ueda, T., Kato, M., Kohchi, T.

Date: 2025-12-13 · Version: 1
DOI: 10.64898/2025.12.11.693594

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study identified 12 SABATH methyltransferase genes in the liverwort Marchantia polymorpha and demonstrated that MpSABATH2 is crucial for normal thallus growth and gemma cup formation. Loss‑of‑function mutants displayed developmental phenotypes reminiscent of far‑red light responses, which were linked to gibberellin metabolism and could be partially rescued by inhibiting GA biosynthesis or supplying the GA precursor ent‑kaurenoic acid. These findings suggest that SABATH enzymes independently evolved regulatory roles in land‑plant development.

SABATH methyltransferases Marchantia polymorpha gibberellin metabolism far‑red light response developmental regulation

Carbon availability acts via cytokinins to promote gemma cup formation in Marchantia polymorpha

Authors: Humphreys, J. L., Fisher, T. J., Perez, T. A., Flores-Sandoval, E., Silvestri, A., Rubio-Somoza, I., Barbier, F. F.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.08.692956

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study demonstrates that carbon availability promotes gemma cup formation in Marchantia polymorpha by activating cytokinin signaling, which up‑regulates the transcription factors MpGCAM1 and MpSTG. Pharmacological and genetic manipulations showed that cytokinin accumulation in response to sucrose and high light is sufficient to overcome low‑sucrose repression, and that this pathway operates independently of KAI2A‑MAX2 mediated karrikin signaling. The findings suggest a conserved carbon‑cytokinin interaction governing developmental plasticity across land plants.

gemma cup formation carbon availability cytokinin signaling Marchantia polymorpha MpGCAM1/MpSTG transcription factors

KDM7-mediated oxygen sensing reprograms chromatin to enhance hypoxia tolerance in the root

Authors: Zhang, D., Chirinos, X., Del Chiaro, A., Shukla, V., Ryder, A., Beltran, A. D. P., Iacopino, S., Bota, P., Zivkovic, D., Fioriti, F., Telara, Y., Ellison, C. J., Costa, F., Elliott, P. R., Giorgi, F., Giuntoli, B., Flashman, E. G., Abreu, I., Licausi, F.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.24.690241

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study shows that Arabidopsis root tips adapt to hypoxia by increasing H3K4me3 levels, linked to the inhibition of group 7 demethylases (KDM7s). Genetic loss of KDM7s mimics hypoxic conditions, activating genes that sustain meristem survival, suggesting KDM7s act as root‑specific oxygen sensors that prime epigenetic tolerance mechanisms.

hypoxia root meristem H3K4 trimethylation KDM7 demethylase Arabidopsis

The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress

Authors: Yu, L., Melandri, G., Dittrich, A. C., Calleja, S., Rozzi, B., Ganguly, D. R., Palos, K., Srinivasan, A., Brewer, E. K., Fischer, H., Obata, T., Elgawad, H. A., Beemster, G. T. S., Henderson, R., Garcia, C. D., Zhang, X., Stern, D., Eveland, A., Schroeder, S. J., Skirycz, A., Lyons, E., Arnold, E. A., Gregory, B. D., Nelson, A. D. L., Pauli, D.

Date: 2025-11-24 · Version: 3
DOI: 10.1101/2025.01.17.633510

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study integrates multi-omics data from six Sorghum bicolor accessions under field drought to link RNA covalent modifications (RCMs) with photosynthetic performance, identifying the enzyme SbDUS2 that produces dihydrouridine (DHU) on transcripts. Loss‑of‑function dus2 mutants in Arabidopsis thaliana reveal that DHU deficiency leads to hyperstability of photosynthesis‑related mRNAs, impairing germination, development, and stress‑induced CO2 assimilation. The authors propose DHU as a post‑transcriptional mark that promotes rapid mRNA turnover during abiotic stress, enhancing plant resilience.

RNA covalent modifications dihydrouridine (DHU) drought stress photosynthesis RNA stability

MpNPR modulates lineage-specific oil body development and defence against gastropod herbivory in Marchantia polymorpha

Authors: Espinosa-Cores, L., Michavila, S., Gonzalez-Zuloaga, M., Solano, R., Gimenez-Ibanez, S.

Date: 2025-11-17 · Version: 1
DOI: 10.1101/2025.11.17.688000

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study characterizes the liverwort-specific NPR protein (MpNPR) in Marchantia polymorpha, demonstrating that it controls oil body formation and confers resistance to gastropod herbivory through interaction with the transcription factor MpERF13. Loss- or gain-of-function of MpNPR disrupts MpERF13‑dependent gene expression and compromises defense against snail feeding, revealing a lineage‑specific immune pathway distinct from tracheophyte NPR functions.

Marchantia polymorpha NPR signaling oil body formation MpERF13 gastropod herbivory

Antagonism between blue and red light-signalling controls thallus flatness in Marchantia polymorpha

Authors: Roetzer, J., Asper, B., Meir, Z., Edelbacher, N., Merai, Z., Datta, S., Dolan, L.

Date: 2025-11-11 · Version: 1
DOI: 10.1101/2025.11.10.687525

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study demonstrates that red and blue light have opposing effects on thallus growth orientation in Marchantia polymorpha, with red light promoting epinasty and blue light promoting hyponasty. Loss-of-function mutants in the respective photoreceptors and BBX transcription factors reveal antagonistic interactions that balance thallus flatness under white light. Time‑resolved transcriptomics identified rapid light‑induced genes, including all six MpBBX members, whose mutant phenotypes support this antagonistic model.

light signaling thallus tropism Marchantia polymorpha photoreceptor mutants BBX transcription factors

Nanoclustering of a plant transcription factor enables strong yet specific DNA binding

Authors: Arfman, K., Janssen, B. P. J., Romein, R., van den Boom, S., van der Woude, M., Jansen, L., Rademaker, M., Hernandez-Garcia, J., Ramalho, J. J., Dipp-Alvarez, M., Borst, J. W., Weijers, D., van Mierlo, C. P. M., Sprakel, J.

Date: 2025-11-06 · Version: 1
DOI: 10.1101/2025.11.05.686732

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study reveals that the Auxin Response Factor MpARF2 in Marchantia polymorpha forms nanoscopic clusters within the plant nucleus, representing a distinct mode of DNA binding distinct from monomeric/oligomeric binding and liquid phase-separated condensates. These nanoclusters provide high‑affinity, switch‑like, sequence‑specific DNA interaction, suggesting a novel mechanism for transcriptional regulation by TF nanoclustering.

Transcription factor nanoclusters Auxin Response Factors Liquid phase separation Marchantia polymorpha DNA‑binding specificity

Conservation and divergence of UVR8-COP1/SPA-HY5 signaling in UV-B responses of Marchantia polymorpha

Authors: Liang, Y., Podolec, R., Chappuis, R., Defossez, E., Glauser, G., Rötzer, J., Stolze, S. C., Dolan, L., Nakagami, H., Demarsy, E., Ulm, R.

Date: 2025-11-04 · Version: 2
DOI: 10.1101/2025.07.16.665153

Category: Plant Biology

Model Organism: Marchantia polymorpha

AI Summary

The study reveals that in the liverwort Marchantia polymorpha, the UV‑B photoreceptor MpUVR8 forms homodimers that monomerize and accumulate in the nucleus upon UV‑B exposure, activating COP1‑dependent growth inhibition, gene expression reprogramming, and UV‑absorbing metabolite production. MpRUP promotes redimerization of MpUVR8, acting as a negative regulator, while MpSPA also negatively modulates UVR8 signaling, indicating lineage‑specific diversification of UV‑B signaling components that originated over 400 Myr ago.

UV‑B signaling Marchantia polymorpha MpUVR8 COP1 RUP
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