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AI-summarized plant biology research papers from bioRxiv

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Latest 47 Papers

Phosphite, an analog of phosphate, counteracts Phosphate Induced Susceptibility of rice to the blast fungus Magnaporthe oryzae

Authors: Mallavarapu, M. D., Martin-Cardoso, H., Bücker, G., Alussi, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-23 · Version: 1
DOI: 10.64898/2026.01.22.700763

Category: Plant Biology

Model Organism: Multi-species

AI Summary

Phosphite (Phi) and phosphate (Pi) share the same root uptake system, but Phi acts as a biostimulant that modulates plant growth and disease resistance in a species‑ and Pi‑dependent manner. In Arabidopsis, Phi induces hypersensitive‑like cell death and enhances resistance to Plectosphaerella cucumerina, while in rice it counteracts Pi‑induced susceptibility to Magnaporthe oryzae and Fusarium fujikuroi, accompanied by extensive transcriptional reprogramming.

phosphite (Phi) phosphate (Pi) plant immunity pathogen resistance transcriptomic reprogramming

Effects of atmospheric CO2 levels on the susceptibility of maize to diverse pathogens

Authors: Khwanbua, E., Qi, Y., Ssengo, J., Liu, P., Graham, M. A., Whitham, S.

Date: 2026-01-02 · Version: 1
DOI: 10.64898/2025.12.31.697224

Category: Plant Biology

Model Organism: Zea mays

AI Summary

The study examined how elevated atmospheric CO₂ (550 ppm) affects immunity in the C₄ cereal maize (Zea mays L.) by exposing plants grown under ambient and elevated CO₂ to a range of pathogens. Elevated CO₂ increased susceptibility to sugarcane mosaic virus, decreased susceptibility to several bacterial and fungal pathogens, and left susceptibility to others unchanged, with reduced bacterial disease linked to heightened basal immune responses. These findings provide a baseline for future investigations into CO₂‑responsive defense mechanisms in C₄ crops.

elevated CO₂ maize plant immunity pathogen susceptibility C4 crops

Do stomatal movements have a limited dynamic range?

Authors: Muraya, F., Siqueira, J. A., Very, A.-A., Roelfsema, R.

Date: 2025-12-26 · Version: 1
DOI: 10.64898/2025.12.22.695892

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study examined the roles of AtKUP2, AtKUP6, AtKUP8, and GORK potassium transport proteins in guard cell function by performing gas-exchange measurements on mature Arabidopsis leaves. Loss of KUP2/6/8 reduced stomatal conductance, whereas a GORK loss‑of‑function mutant showed increased conductance, yet the magnitude of light‑ and ABA‑induced transpiration changes remained similar across genotypes, suggesting a limited dynamic range for rapid stomatal movements that relies on small ionic osmolytes.

stomatal conductance potassium transporters GORK channel AtKUP2/6/8 Arabidopsis

In vivo binding by Arabidopsis SPLICING FACTOR 1 shifts 3' splice site choice, regulating circadian rhythms and immunity in plants

Authors: Agrofoglio, Y. C., Iglesias, M. J., de Leone, M. J., Hernando, C. E., Lewinski, M., Torres, S. B., Contino, G., Yanovsky, M. J., Staiger, D., Mateos, J. L.

Date: 2025-12-17 · Version: 1
DOI: 10.64898/2025.12.17.693997

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study characterizes the plant spliceosomal protein AtSF1 in Arabidopsis thaliana, using iCLIP and RNA‑seq to map its in vivo branch point binding sites and demonstrate that loss of AtSF1 causes widespread 3' splice‑site mis‑selection. Structural comparison reveals a plant‑specific domain architecture, and the identified AtSF1 targets are enriched for circadian and defense genes, linking splicing regulation to timing and immunity.

alternative splicing branch point recognition AtSF1 circadian clock regulation plant immunity

The functional divergence of two ethylene receptor subfamilies that exhibit Ca2+-permeable channel activity

Authors: Pan, C., Cheng, J., Lin, Z., Hao, D., Xiao, Z., Ming, Y., Song, W., Liu, L., Guo, H.

Date: 2025-11-29 · Version: 1
DOI: 10.1101/2025.11.28.691086

Category: Plant Biology

Model Organism: General

AI Summary

The study demonstrates that subfamily I ethylene receptors form the core ethylene‑sensing module and act epistatically over subfamily II receptors, uniquely possessing Ca2+‑permeable channel activity that drives ethylene‑induced cytosolic calcium influx. This reveals a mechanistic link whereby subfamily I receptors integrate hormone perception with calcium signaling in plants.

ethylene signaling subfamily I receptors Ca2+ influx epistasis hormone‑induced calcium channel

KDM7-mediated oxygen sensing reprograms chromatin to enhance hypoxia tolerance in the root

Authors: Zhang, D., Chirinos, X., Del Chiaro, A., Shukla, V., Ryder, A., Beltran, A. D. P., Iacopino, S., Bota, P., Zivkovic, D., Fioriti, F., Telara, Y., Ellison, C. J., Costa, F., Elliott, P. R., Giorgi, F., Giuntoli, B., Flashman, E. G., Abreu, I., Licausi, F.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.24.690241

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study shows that Arabidopsis root tips adapt to hypoxia by increasing H3K4me3 levels, linked to the inhibition of group 7 demethylases (KDM7s). Genetic loss of KDM7s mimics hypoxic conditions, activating genes that sustain meristem survival, suggesting KDM7s act as root‑specific oxygen sensors that prime epigenetic tolerance mechanisms.

hypoxia root meristem H3K4 trimethylation KDM7 demethylase Arabidopsis

The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress

Authors: Yu, L., Melandri, G., Dittrich, A. C., Calleja, S., Rozzi, B., Ganguly, D. R., Palos, K., Srinivasan, A., Brewer, E. K., Fischer, H., Obata, T., Elgawad, H. A., Beemster, G. T. S., Henderson, R., Garcia, C. D., Zhang, X., Stern, D., Eveland, A., Schroeder, S. J., Skirycz, A., Lyons, E., Arnold, E. A., Gregory, B. D., Nelson, A. D. L., Pauli, D.

Date: 2025-11-24 · Version: 3
DOI: 10.1101/2025.01.17.633510

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study integrates multi-omics data from six Sorghum bicolor accessions under field drought to link RNA covalent modifications (RCMs) with photosynthetic performance, identifying the enzyme SbDUS2 that produces dihydrouridine (DHU) on transcripts. Loss‑of‑function dus2 mutants in Arabidopsis thaliana reveal that DHU deficiency leads to hyperstability of photosynthesis‑related mRNAs, impairing germination, development, and stress‑induced CO2 assimilation. The authors propose DHU as a post‑transcriptional mark that promotes rapid mRNA turnover during abiotic stress, enhancing plant resilience.

RNA covalent modifications dihydrouridine (DHU) drought stress photosynthesis RNA stability

Effects of carbon dioxide enrichment and environmental factors on photosynthesis, growth and yield and their interaction in cucumber: a meta-analysis

Authors: Liu, X., Liu, X., Xu, Y., Wang, Z., Sun, Q., Liu, S., Liu, B., Li, Q.

Date: 2025-11-01 · Version: 1
DOI: 10.1101/2025.10.31.685732

Category: Plant Biology

Model Organism: Cucumis sativus

AI Summary

A meta‑analysis of 73 studies on cucumber (Cucumis sativus) under elevated CO₂ (eCO₂) revealed that eCO₂ significantly increased net photosynthetic rate (+56.31%), biomass (+27.75%) and yield (+21.98%), while reducing stomatal conductance (‑36.07%) and transpiration (‑30.42%). The authors recommend maintaining eCO₂ levels between 800–1200 ppm together with higher light, temperature, optimal humidity, and adequate fertilization to optimise greenhouse cucumber production under climate‑change scenarios.

elevated CO₂ cucumber (Cucumis sativus) photosynthesis biomass and yield meta‑analysis

Systematic Analysis of the EXO70 Gene Family in Kiwifruit Species: Evolutionary Selection and Potential Functions in Plant Immunity

Authors: Cui, W., DENG, C. H., Yoon, M. H., Zarsky, V., Rikkerink, E. H. A.

Date: 2025-10-28 · Version: 1
DOI: 10.1101/2025.10.28.684437

Category: Plant Biology

Model Organism: Actinidia spp.

AI Summary

A genome-wide survey identified 217 EXO70 genes across five kiwifruit (Actinidia spp.) species, classifying them into three subfamilies and nine clades and revealing lineage‑specific expansions, especially in EXO70C, EXO70E, and EXO70H. Functional assays demonstrated that kiwifruit EXO70B1 interacts with the immune hub protein RIN4_1, suggesting a conserved EXO70‑RIN4 module in plant immunity. The study provides a foundational resource for exploring EXO70‑mediated disease resistance in kiwifruit.

EXO70 gene family Actinidia vesicle trafficking plant immunity RIN4 interaction

Enterobacter sp. SA187-induced coordinated regulation of high-affinity nitrate transporters and ethylene signaling enhances nitrogen content and plant growth under low nitrate

Authors: Ilyas, A., Mauve, C., Decouard, B., Caius, J., Paysant-Leroux, C., Hodges, M., de Zelicourt, A.

Date: 2025-10-26 · Version: 2
DOI: 10.1101/2025.06.23.660384

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study shows that inoculation with the non‑diazotrophic bacterium Enterobacter sp. SA187 significantly improves Arabidopsis thaliana growth under low nitrate conditions by increasing fresh weight, primary root length, and lateral root density, while enhancing nitrate accumulation and reducing shoot C:N ratios. Transcriptomic and mutant analyses reveal that these benefits depend on ethylene signaling and the activity of high‑affinity nitrate transporters NRT2.5 and NRT2.6, indicating an ethylene‑mediated, HATS‑dependent reprogramming of nitrogen uptake.

Enterobacter sp. SA187 low nitrate nutrition ethylene signaling high-affinity nitrate transporters plant‑growth‑promoting bacteria
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