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AI-summarized plant biology research papers from bioRxiv

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Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701354

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study demonstrates that short‑term low phosphate treatment delays leaf senescence in rice by increasing photosynthetic pigments, enhancing antioxidant enzyme activities, and reducing oxidative damage, whereas high phosphate accelerates senescence. CRISPR/Cas9 editing of MIR827 to lower Pi levels also postpones senescence, while overexpression of MIR827 or MIR399, which raises Pi, speeds it up. Transcriptomic profiling reveals coordinated changes in senescence‑associated and metabolic pathways underlying the low‑phosphate response.

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

Integrative comparative transcriptomics using cultivated and wild rice reveals key regulators of developmental and photosynthetic progression along the rice leaf developmental gradient

Authors: Jathar, V., Vivek, A., Panda, M. K., Daware, A. V., Dwivedi, A., Rani, R., Kumar, S., Ranjan, A.

Date: 2025-08-09 · Version: 1
DOI: 10.1101/2025.08.07.669153

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study performed comparative gene expression profiling across four rice accessions—from shoot apical meristem to primordia stage P5—to delineate developmental and photosynthetic transitions in leaf development. By integrating differential expression and gene regulatory network analyses, the authors identified stage-specific regulatory events and key transcription factors, such as RDD1, ARID2, and ERF3, especially in the wild rice Oryza australiensis, offering a comprehensive framework for optimizing leaf function.

leaf development gene regulatory networks photosynthesis rice (Oryza) transcription factors

Integrative transcriptomic and phosphoproteomic analysis reveals key components of SnRK1 signaling network in rice

Authors: Faria-Bates, M. C., Maurya, C., Jamsheer K, M., Srivastava, V.

Date: 2025-07-23 · Version: 1
DOI: 10.1101/2025.07.22.666209

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study used CRISPR/Cas9 to generate rice snrk1 mutants and performed integrated phenotypic, transcriptomic, proteomic, and phosphoproteomic analyses under normal and starvation conditions, revealing SnRK1’s dual role in promoting growth and mediating stress responses. Findings indicate sub-functionalization of SnRK1 subunits and identify novel phosphorylation targets linked to membrane trafficking, ethylene signaling, and ion transport.

SnRK1 rice CRISPR/Cas9 phosphoproteomics stress response

Fine-tuning quantitative agronomic traits by manipulating gene copy number in rice

Authors: Nomura, C., Kanzaki, H., Kanzaki, E., Shimizu, M., Oikawa, K., Utsushi, H., Ito, K., Sugimura, Y., Terauchi, R., Abe, A.

Date: 2025-05-16 · Version: 1
DOI: 10.1101/2025.05.16.654416

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study used CRISPR/Cas9 to create rice lines with one to three tandem copies of the OsMADS18 gene and confirmed copy-number through high‑throughput qPCR. Incremental increases in OsMADS18 copy number produced proportional rises in transcript levels and corresponding enhancements in leaf blade and culm length, showing that gene dosage can be leveraged to fine‑tune agronomic traits.

copy number variation OsMADS18 CRISPR/Cas9 rice (Oryza sativa) agronomic trait improvement