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Molecular basis of delayed leaf senescence induced by short-term treatment with low phosphate in rice

Authors: Martin-Cardoso, H., Bundo, M., Garcia-Molina, A., San Segundo, B.

Date: 2026-01-24 · Version: 1
DOI: 10.64898/2026.01.23.701354

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study demonstrates that short‑term low phosphate treatment delays leaf senescence in rice by increasing photosynthetic pigments, enhancing antioxidant enzyme activities, and reducing oxidative damage, whereas high phosphate accelerates senescence. CRISPR/Cas9 editing of MIR827 to lower Pi levels also postpones senescence, while overexpression of MIR827 or MIR399, which raises Pi, speeds it up. Transcriptomic profiling reveals coordinated changes in senescence‑associated and metabolic pathways underlying the low‑phosphate response.

phosphate deficiency leaf senescence Oryza sativa CRISPR/Cas9 transcriptomic analysis

A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula)

Authors: Liu, S., Doyle, S. M., Robinson, K. M., Rahneshan, Z., Street, N. R., Robert, S.

Date: 2026-01-16 · Version: 1
DOI: 10.64898/2026.01.16.699252

Category: Plant Biology

Model Organism: Populus tremula

AI Summary

The study examined leaf pavement cell shape complexity across a natural European aspen (Populus tremula) population, using GWAS to pinpoint the transcription factor MYB305a as a regulator of cell geometry. Functional validation showed that MYB305a expression is induced by drought and contributes to shape simplification, with cell complexity negatively correlated with water-use efficiency and climatic variables of the genotypes' origin.

leaf pavement cells Populus tremula MYB305a GWAS drought stress

Wheat diversity reveals new genomic loci and candidate genes for vegetation indices using genome-wide association analysis

Authors: Rustamova, S., Jahangirov, A., Leon, J., Naz, A. A., Huseynova, I.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699455

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

A genome‑wide association study of 187 bread wheat genotypes identified 812 significant loci linked to 25 spectral vegetation indices under rainfed drought conditions, revealing a major QTL hotspot on chromosome 2A that accounts for up to 20% of variance in greenness and pigment traits. Candidate gene analysis at this hotspot uncovered stress‑responsive genes, demonstrating that vegetation indices are heritable digital phenotypes useful for selection and genetic analysis of drought resilience.

Triticum aestivum drought stress spectral vegetation indices GWAS QTL hotspot

CRK5 preserves antioxidant homeostasis and prevents cell death during dark-induced senescence through inhibiting the salicylic acid signaling pathway

Authors: Kamran, M., Burdiak, P., Rusaczonek, A., Zarrin Ghalami, R., Karpinski, S.

Date: 2026-01-12 · Version: 1
DOI: 10.64898/2026.01.12.698963

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identifies the cysteine‑rich receptor‑like kinase CRK5 as a negative regulator of salicylic‑acid‑mediated cell death and a positive regulator of antioxidant homeostasis during dark‑induced leaf senescence in Arabidopsis. Loss‑of‑function crk5 mutants display accelerated senescence, elevated ROS and electrolyte leakage, and altered antioxidant enzyme activities, phenotypes that are rescued by suppressing SA biosynthesis or catabolism. Transcriptome analysis reveals extensive deregulation of senescence‑ and redox‑related genes, highlighting CRK5’s central role in coordinating hormonal and oxidative pathways.

dark-induced senescence salicylic acid signaling CRK5 receptor kinase reactive oxygen species antioxidant homeostasis

Comparative Evaluation of Conventional Inorganic Fertilization and Sesbania rostrata Green Manuring on Soil Properties and the Growth and Development of Oryza sativa L. Pant Basmati 1

Authors: Joshi, H. C., Patni, B., Guru, S. K., Bhatt, M. K., Singh, M.

Date: 2025-12-26 · Version: 1
DOI: 10.64898/2025.12.24.696455

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

A two‑year field trial compared conventional and organic nutrient management on the Basmati rice cultivar Pant Basmati 1, revealing that conventional fertilizer enhanced later‑stage growth and grain yield, while organic inputs increased early plant height and markedly improved soil health and harvest index in the second year. Despite some yield differences, organic management achieved comparable productivity with superior soil macro‑ and micronutrient status, water‑holding capacity, aggregate stability, and enzyme activities, supporting its sustainability as an alternative nutrient regime.

Oryza sativa organic nutrient management soil health harvest index Basmati rice

GWAs reveals SUBER GENE1-mediated suberization via Type One Phosphatases

Authors: Han, J.-P., Lefebvre-Legendre, L., Yu, J., Capitao, M. B., Beaulieu, C., Gully, K., Shukla, V., Wu, Y., Boland, A., Nawrath, C., Barberon, M.

Date: 2025-12-12 · Version: 2
DOI: 10.1101/2025.05.06.652434

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

Using a forward genetic screen of 284 Arabidopsis thaliana accessions, the study identified extensive natural variation in root endodermal suberin and pinpointed the previously unknown gene SUBER GENE1 (SBG1) as a key regulator. GWAS and protein interaction analyses revealed that SBG1 controls suberin deposition by binding type‑one protein phosphatases (TOPPs), with disruption of this interaction or TOPP loss‑of‑function altering suberin levels, linking the pathway to ABA signaling.

suberin deposition Arabidopsis thaliana GWAS SBG1 TOPP phosphatases

The Pik NLR pair accumulates at the plasma membrane as a hetero-oligomeric sensor-helper immune protein complex prior to activation

Authors: Pai, H., Contreras, M. P., Salguero Linares, J., Luedke, D., Posbeyikian, A., Kourelis, J., Kamoun, S., Marchal, C.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.11.30.691369

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study examined the pre‑activation state of the rice NLR pair Pik‑1 (sensor) and Pik‑2 (helper) when transiently expressed in Nicotiana benthamiana leaves. Both wild‑type and engineered Pik‑1 variants constitutively associate with Pik‑2 to form ~1 MDa hetero‑oligomeric complexes that localize to the plasma membrane in the absence of effector. These results reveal that some NLRs exist as pre‑assembled membrane‑associated complexes prior to pathogen perception.

NLR oligomerization Pik-1/Pik-2 sensor‑helper pair resting state complex plasma membrane localization Oryza sativa

Identification of a putative RBOHD-FERONIA-CRK10-PIP2;6 plasma membrane complex that interacts with phyB to regulate ROS production in Arabidopsis thaliana

Authors: Mohanty, D., Fichman, Y., Pelaez-Vico, M. A., Myers, R. J., Sealander, M., Sinha, R., Morrow, J., Eckstein, R., Olson, K., Xu, C., An, H., Yoo, C. Y., Zhu, J.-K., Zhao, C., Zandalinas, S. I., Liscum, E., Mittler, R.

Date: 2025-11-26 · Version: 1
DOI: 10.1101/2025.11.23.689998

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study demonstrates that FERONIA and phytochrome B physically interact with the NADPH oxidase RBOHD, and that FERONIA-mediated phosphorylation of phyB is essential for RBOHD-driven ROS production under excess light stress in Arabidopsis thaliana. Additional membrane proteins CRK10 and PIP2;6 also associate with this complex, forming a plasma‑membrane assembly that integrates multiple signaling pathways to regulate stress‑induced ROS.

reactive oxygen species FERONIA phytochrome B RBOHD excess light stress

The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress

Authors: Yu, L., Melandri, G., Dittrich, A. C., Calleja, S., Rozzi, B., Ganguly, D. R., Palos, K., Srinivasan, A., Brewer, E. K., Fischer, H., Obata, T., Elgawad, H. A., Beemster, G. T. S., Henderson, R., Garcia, C. D., Zhang, X., Stern, D., Eveland, A., Schroeder, S. J., Skirycz, A., Lyons, E., Arnold, E. A., Gregory, B. D., Nelson, A. D. L., Pauli, D.

Date: 2025-11-24 · Version: 3
DOI: 10.1101/2025.01.17.633510

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study integrates multi-omics data from six Sorghum bicolor accessions under field drought to link RNA covalent modifications (RCMs) with photosynthetic performance, identifying the enzyme SbDUS2 that produces dihydrouridine (DHU) on transcripts. Loss‑of‑function dus2 mutants in Arabidopsis thaliana reveal that DHU deficiency leads to hyperstability of photosynthesis‑related mRNAs, impairing germination, development, and stress‑induced CO2 assimilation. The authors propose DHU as a post‑transcriptional mark that promotes rapid mRNA turnover during abiotic stress, enhancing plant resilience.

RNA covalent modifications dihydrouridine (DHU) drought stress photosynthesis RNA stability

Proline transporters balance the salicylic acid-mediated trade-off between regeneration and immunity in plants

Authors: Yang, L., Xu, D., Belew, Z. M., Cassia Ferreira Dias, N., Wang, L., Zhang, A., Chen, Y.-F. S., Newton, C. J., Kong, F., Zheng, Y., Yao, Y., Brewer, M. T., Teixeira, P. J. P. L., Nour-Eldin, H. H., Xu, D.

Date: 2025-11-20 · Version: 1
DOI: 10.1101/2025.11.20.689487

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study identifies wound‑induced proline transporters ProT2 and ProT3 as central regulators that link salicylic acid signaling to the suppression of de novo root regeneration (DNRR) via modulation of reactive oxygen species dynamics. Genetic loss of these transporters or pharmacological inhibition of proline transport alleviates SA‑mediated regeneration inhibition across several plant species without compromising disease resistance.

salicylic acid proline transporters de novo root regeneration reactive oxygen species immunity‑regeneration trade‑off
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