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The mRNA covalent modification dihydrouridine regulates transcript turnover and photosynthetic capacity during plant abiotic stress

Authors: Yu, L., Melandri, G., Dittrich, A. C., Calleja, S., Rozzi, B., Ganguly, D. R., Palos, K., Srinivasan, A., Brewer, E. K., Fischer, H., Obata, T., Elgawad, H. A., Beemster, G. T. S., Henderson, R., Garcia, C. D., Zhang, X., Stern, D., Eveland, A., Schroeder, S. J., Skirycz, A., Lyons, E., Arnold, E. A., Gregory, B. D., Nelson, A. D. L., Pauli, D.

Date: 2025-11-24 · Version: 3
DOI: 10.1101/2025.01.17.633510

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study integrates multi-omics data from six Sorghum bicolor accessions under field drought to link RNA covalent modifications (RCMs) with photosynthetic performance, identifying the enzyme SbDUS2 that produces dihydrouridine (DHU) on transcripts. Loss‑of‑function dus2 mutants in Arabidopsis thaliana reveal that DHU deficiency leads to hyperstability of photosynthesis‑related mRNAs, impairing germination, development, and stress‑induced CO2 assimilation. The authors propose DHU as a post‑transcriptional mark that promotes rapid mRNA turnover during abiotic stress, enhancing plant resilience.

RNA covalent modifications dihydrouridine (DHU) drought stress photosynthesis RNA stability

Advanced illumination-imaging reveals photosynthesis-triggered pH, ATP and NAD redox signatures across plant cell compartments

Authors: Zheng, K., Elsässer, M., Niemeier, J.-O., Barreto, P., Cislaghi, A. P., Hoang, M., Feitosa-Araujo, E., Wagner, S., Giese, J., Kotnik, F., Martinez, M. d. P., Buchert, F. E., Ugalde, J. M., Armbruster, U., Hippler, M., Meyer, A. J., Kunz, H.-H., Maurino, V. G., Finkemeier, I., Schallenberg-Rüdinger, M., Schwarzländer, M.

Date: 2025-06-21 · Version: 1
DOI: 10.1101/2025.06.16.659786

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The authors established a live‑cell imaging platform that combines confocal microscopy of genetically encoded fluorescent protein biosensors with on‑stage illumination to monitor pH, MgATP²⁻, and NADH/NAD⁺ dynamics during dark‑light transitions in Arabidopsis mesophyll cells. They discovered that photosynthetic proton pumping triggers a stromal alkalinization wave extending to the cytosol and mitochondria, elevates MgATP²⁻ levels, and drives reduction of the NAD pool, with malate dehydrogenase mutants showing altered cytosolic redox even in darkness. This methodological advance enables high‑resolution mapping of photosynthesis‑linked energy physiology across cellular compartments.

photosynthesis fluorescent protein biosensors subcellular pH dynamics MgATP2- signaling NAD redox metabolism

Acclimation of carbon metabolism to a changing environment across a leaf rosette of Arabidopsis thaliana

Authors: Brodsky, V., Kerscher, A., Urban, M., Naegele, T.

Date: 2025-05-03 · Version: 1
DOI: 10.1101/2025.04.29.651223

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study compared photosynthetic performance and carbon metabolism in mature versus immature leaves of Arabidopsis thaliana accessions from different latitudes under standard and low‑temperature/high‑light conditions. Leaf‑specific measurements of Fv/Fm and CO2 assimilation revealed distinct acclimation capacities, and integration of carbohydrate and carboxylic‑acid profiles into a carbon balance model indicated that mature leaves help stabilize metabolism in younger tissue. The authors emphasize the importance of accounting for intra‑rosette heterogeneity to avoid misleading metabolic interpretations.

Arabidopsis thaliana leaf-specific acclimation photosynthesis carbon metabolism carbon balance modeling