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AI-summarized plant biology research papers from bioRxiv

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Latest 43 Papers

A drought stress-induced MYB transcription factor regulates pavement cell shape in leaves of European aspen (Populus tremula)

Authors: Liu, S., Doyle, S. M., Robinson, K. M., Rahneshan, Z., Street, N. R., Robert, S.

Date: 2026-01-16 · Version: 1
DOI: 10.64898/2026.01.16.699252

Category: Plant Biology

Model Organism: Populus tremula

AI Summary

The study examined leaf pavement cell shape complexity across a natural European aspen (Populus tremula) population, using GWAS to pinpoint the transcription factor MYB305a as a regulator of cell geometry. Functional validation showed that MYB305a expression is induced by drought and contributes to shape simplification, with cell complexity negatively correlated with water-use efficiency and climatic variables of the genotypes' origin.

leaf pavement cells Populus tremula MYB305a GWAS drought stress

Wheat diversity reveals new genomic loci and candidate genes for vegetation indices using genome-wide association analysis

Authors: Rustamova, S., Jahangirov, A., Leon, J., Naz, A. A., Huseynova, I.

Date: 2026-01-14 · Version: 1
DOI: 10.64898/2026.01.14.699455

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

A genome‑wide association study of 187 bread wheat genotypes identified 812 significant loci linked to 25 spectral vegetation indices under rainfed drought conditions, revealing a major QTL hotspot on chromosome 2A that accounts for up to 20% of variance in greenness and pigment traits. Candidate gene analysis at this hotspot uncovered stress‑responsive genes, demonstrating that vegetation indices are heritable digital phenotypes useful for selection and genetic analysis of drought resilience.

Triticum aestivum drought stress spectral vegetation indices GWAS QTL hotspot

Physiological Characterization under the Influence of Drought Stress and Salicylic Acid in Valeriana wallichii DC

Authors: Ansari, S., Patni, B., Jangpangi, D., Joshi, H. C., Bhatt, M. K., Purohit, V.

Date: 2026-01-09 · Version: 1
DOI: 10.64898/2026.01.09.698547

Category: Plant Biology

Model Organism: Valeriana wallichii

AI Summary

The study investigated the ability of foliar-applied salicylic acid (SA) to alleviate drought stress in the high‑altitude medicinal plant Valeriana wallichii by measuring physiological and biochemical responses during vegetative and flowering stages. SA at specific concentrations improved photosynthetic rates, water‑use efficiency, chlorophyll content, membrane stability, and root biomass under both severe (25% field capacity) and moderate (50% field capacity) drought conditions. These results suggest that SA treatment enhances drought tolerance and productivity in this species.

drought stress salicylic acid Valeriana wallichii photosynthetic efficiency water use efficiency

Dynamic ASK1 proximity networks uncover SCF-dependent and noncanonical roles in ABA and drought adaptation

Authors: Rodriguez-Zaccaro, F. D., Moe-Lange, J., Malik, S., Montes-Serey, C., Hamada, N., Groover, A., Walley, J., Shabek, N.

Date: 2025-12-25 · Version: 1
DOI: 10.64898/2025.12.22.696057

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study maps the in vivo proximity interactome of Arabidopsis SKP1-LIKE 1 (ASK1) under acute abscisic acid (ABA) signaling and prolonged drought using TurboID-based proximity labeling and quantitative proteomics, revealing condition-specific networks that include both canonical SCF modules and diverse noncanonical partners. Overexpression of ASK1 shifts proteome composition toward drought‑protective and ABA‑responsive proteins while repressing immune and ROS‑scavenging pathways, highlighting ASK1 as a hub that integrates SCF‑dependent and independent pathways to reprogram transcription, translation, and proteostasis during stress adaptation.

ASK1 SCF ubiquitin ligases abscisic acid signaling drought stress TurboID proximity labeling

Assessing Drought Resilience and Identification of High Yielding Upland Rice Varieties through Phenology, Growth and Yield Traits

Authors: Hussain, T., Anothai, J., Nualsri, C., Ali, A., Ali, M. F., Khomphet, T.

Date: 2025-12-23 · Version: 1
DOI: 10.64898/2025.12.20.695743

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

Sixteen upland rice varieties were evaluated under three irrigation regimes (100%, 70%, and 50% field capacity) with additional six‑day water withholding to simulate moderate and severe drought. Yield losses ranged from 35% to 78% depending on stress level, and varieties Dawk Kha, Khao/Sai, and Dawk Pa‑yawm showed the greatest stability, suggesting they are promising for breeding drought‑resilient upland rice.

upland rice drought stress field capacity irrigation yield loss varietal stability

Network Inference Reveals Distinct Transcriptional Regulation in Barley against Drought and Fusarium Head Blight

Authors: Steidele, C. E., Kersting, J., Hoheneder, F., List, M., Hueckelhoven, R.

Date: 2025-12-09 · Version: 1
DOI: 10.64898/2025.12.09.693163

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

The study used Weighted Gene Correlation Network Analysis (WGCNA) and GENIE3 to construct co‑expression modules and gene regulatory networks (GRNs) in barley subjected to Fusarium head blight and drought stress. Integration of these approaches highlighted overlapping regulatory patterns, pinpointing WRKY transcription factors as central to FHB response, while bHLH and NAC family members showed stress‑specific roles. Promoter motif enrichment further validated predicted TF‑target interactions, offering candidate regulators for future functional validation.

Fusarium head blight drought stress Barley transcription factor networks co‑expression analysis

Simulating C3-to-CAM transition under ancient atmospheric conditions

Authors: Sarkar, D., Kundu, S.

Date: 2025-12-07 · Version: 2
DOI: 10.1101/2025.09.11.675551

Category: Plant Biology

Model Organism: General

AI Summary

The authors used computational simulations of plant cellular metabolism under historical atmospheric conditions to demonstrate that reduced CO₂ and increased aridity can drive the evolutionary transition from C₃ to CAM photosynthesis. Their results suggest that while future elevated CO₂ may favor a reversion to C₃-like behavior, drought consistently promotes CAM regardless of CO₂ or temperature, and a minimum O₂ level is required for nocturnal respiration in CAM.

Crassulacean Acid Metabolism C3-to-CAM transition atmospheric CO₂ drought stress metabolic simulation

DNA methylation mediates transcriptional stability and transposon-driven trans-regulation under drought in wheat

Authors: Reynolds, I. J., Barratt, L. J., Harper, A. L.

Date: 2025-12-05 · Version: 1
DOI: 10.64898/2025.12.04.692301

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study used paired whole‑genome bisulphite sequencing and RNA‑seq on wheat landraces to investigate how DNA methylation patterns change during drought stress, revealing antagonistic trends across cytosine contexts and a key demethylation role for ROS1a family members. Gene‑body methylation correlated positively with expression but negatively with stress‑responsive changes, while drought‑induced hyper‑methylation of specific transposable elements, especially the RLX_famc9 LTR retrotransposon, appears to modulate downstream gene regulation via siRNA precursors.

drought stress DNA methylation Triticum aestivum ROS1a demethylase transposable elements

Vacuolar invertase knockout enhances drought tolerance in potato plants

Authors: Roitman, M., Teper-Bamnolker, P., Doron-Faigenboim, A., Sikron, N., Fait, A., Vrobel, O., Tarkowski, P., Moshelion, M., Bocobza, S., Eshel, D.

Date: 2025-12-02 · Version: 1
DOI: 10.64898/2025.12.01.691554

Category: Plant Biology

Model Organism: Solanum tuberosum

AI Summary

CRISPR/Cas9 knockout of the vacuolar invertase gene (StVInv) in potato enhanced drought resilience, with mutants maintaining higher stomatal conductance, transpiration, and photosynthetic efficiency, leading to improved agronomic water-use efficiency and biomass under water limitation. Metabolomic profiling showed accumulation of galactinol and raffinose, while ABA levels were reduced, indicating altered osmoprotective and hormonal responses that support sustained growth during drought.

drought stress vacuo lar invertase knockout CRISPR/Cas9 raffinose family oligosaccharides water-use efficiency

Transcriptome and hormone regulations shape drought stress-dependent Fusarium Head Blight susceptibility in different barley genotypes

Authors: Hoheneder, F., Steidele, C. E., Gigl, M., Dawid, C., Hueckelhoven, R.

Date: 2025-11-25 · Version: 1
DOI: 10.1101/2025.11.23.689882

Category: Plant Biology

Model Organism: Hordeum vulgare

AI Summary

Four barley genotypes were examined under simultaneous Fusarium culmorum infection and drought, revealing genotype-dependent Fusarium Head Blight severity and largely additive transcriptomic responses dominated by drought. Co‑expression and hormone profiling linked ABA and auxin to stress‑specific gene modules, and a multiple linear regression model accurately predicted combined‑stress gene expression from single‑stress data, suggesting modular regulation.

Fusarium Head Blight drought stress barley hormone profiling transcriptome analysis
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