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AI-summarized plant biology research papers from bioRxiv

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Latest 27 Papers

Divergent Strategies of Mycorrhiza-Mediated Drought Adaptation in Poplar

Authors: Shi, H., Lu, Z., Polle, A.

Date: 2025-10-02 · Version: 1
DOI: 10.1101/2025.10.01.679871

Category: Plant Biology

Model Organism: Populus spp.

AI Summary

The study compared physiological and transcriptomic responses of poplar trees colonized by the ectomycorrhizal fungi Paxillus involutus or Cenococcum geophilum under normal, drought, and recovery conditions. Cenococcum-colonized plants showed constitutive up‑regulation of heat‑shock proteins, galactinol synthase, and aquaporins and maintained water status and photosynthesis during severe drought, whereas Paxillus colonization promoted growth and nitrogen‑use efficiency and enabled rapid recovery through drought‑induced leaf shedding. These contrasting strategies illustrate species‑specific positions on the growth‑defense trade‑off in ectomycorrhizal symbiosis.

ectomycorrhizal fungi drought tolerance Populus Paxillus involutus Cenococcum geophilum

Improving rice drought tolerance through host-mediated microbiome selection

Authors: Styer, A., Pettinga, D., Caddell, D. F., Coleman-Derr, D.

Date: 2025-09-18 · Version: 2
DOI: 10.1101/2024.02.03.578672

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study used host-mediated artificial selection to iteratively enrich rice-associated microbiomes that improve growth and drought tolerance, starting from diverse soil microbial communities. Over multiple generations, selected microbiomes converged, and amplicon sequencing along with metagenome-assembled genomes identified specific bacterial taxa and functional pathways (e.g., glycerol-3-phosphate and iron transport) linked to enhanced drought performance. The results demonstrate the effectiveness of plant phenotype-driven microbiome engineering for crop improvement.

host-mediated selection drought tolerance microbiome engineering amplicon sequencing metagenome-assembled genomes

Comparative gene regulatory network mapping of Brassicaceae members with differential drought tolerance

Authors: Pandiarajan, R., Lin, C.-W., Sauer, M., Rothballer, S. T., Marin-de la Rosa, N., Schwehn, P., Papadopoulou, E., Mairhormann, B., Falter-Braun, P.

Date: 2025-08-25 · Version: 1
DOI: 10.1101/2025.08.24.668636

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study mapped drought‑responsive gene regulatory networks in Arabidopsis thaliana, its tolerant relative Arabidopsis lyrata, and Eutrema salsugineum using yeast one‑hybrid screens of orthologous promoters, revealing higher network connectivity and specific TF‑promoter interactions in the tolerant species. Notable findings include an Esa‑specific expansion of bZIP interactions, differential ABA‑signalling edges, and the identification of ASIL2 as a novel stress‑responsive factor, providing a comparative framework for improving crop drought tolerance.

drought tolerance gene regulatory network Brassicaceae transcription factor interactions ABA signaling

Integrative comparative transcriptomics using cultivated and wild rice reveals key regulators of developmental and photosynthetic progression along the rice leaf developmental gradient

Authors: Jathar, V., Vivek, A., Panda, M. K., Daware, A. V., Dwivedi, A., Rani, R., Kumar, S., Ranjan, A.

Date: 2025-08-09 · Version: 1
DOI: 10.1101/2025.08.07.669153

Category: Plant Biology

Model Organism: Oryza sativa

AI Summary

The study performed comparative gene expression profiling across four rice accessions—from shoot apical meristem to primordia stage P5—to delineate developmental and photosynthetic transitions in leaf development. By integrating differential expression and gene regulatory network analyses, the authors identified stage-specific regulatory events and key transcription factors, such as RDD1, ARID2, and ERF3, especially in the wild rice Oryza australiensis, offering a comprehensive framework for optimizing leaf function.

leaf development gene regulatory networks photosynthesis rice (Oryza) transcription factors

Harnessing drought tolerance in a reference set of Andean amaranths

Authors: Curti, R. N., Rodriguez, J., Ortega-Baes, P., Bramardi, S. J., Velasquez, B., Andrade, A. J.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668942

Category: Plant Biology

Model Organism: Amaranthus spp.

AI Summary

The study evaluated drought tolerance and yield stability of eleven Andean amaranth genotypes (A. caudatus and A. mantegazzianus) across four agroecological zones in Northwest Argentina under irrigated and drought‑stressed conditions. Using linear mixed models and AMMI analysis, significant genotype and genotype‑by‑environment effects were detected, identifying several breeding lines with high yield and stability as well as a highly stable but low‑yielding landrace. The results highlight both broad and specific adaptation among amaranth genotypes for drought‑prone environments.

drought tolerance genotype × environment interaction Amaranthus yield stability Andean amaranth

The wheat VIH2-3B, a functional PPIP5K controls the localization of fasciclin-like arabinogalactan protein

Authors: Shukla, A., Gopal, R., Ghosh, R., Chaudhuri, A., Agrwal, K., Tanwar, R., Jessen, H., Laha, D., Pandey, A. K.

Date: 2025-07-22 · Version: 2
DOI: 10.1101/2024.09.24.614694

Category: Plant Biology

Model Organism: Triticum aestivum

AI Summary

The study used a yeast two-hybrid screen to identify 52 wheat proteins that interact with the inositol pyrophosphate kinase TaVIH2-3B, highlighting the fasciclin‑like arabinogalactan protein TaFLA7 as a key partner involved in cell‑wall functions. Pulldown assays and reporter fusion analyses confirmed the interaction and plasma‑membrane localization of TaFLA7, which is modulated by TaVIH2‑3B activity and shows drought‑responsive and grain‑development expression in wheat.

Inositol pyrophosphate kinase TaVIH2-3B TaFLA7 cell wall remodeling drought tolerance

Maize mutant hybrids with improved drought tolerance and increased yield in a field experimental setting

Authors: Belen, F., Garnero Patat, P., Jaime, C., Walker, S., Dellaferrera, I., Maiztegui, J., Dunger, G., Dotto, M. C.

Date: 2025-07-11 · Version: 1
DOI: 10.1101/2025.07.10.664191

Category: Plant Biology

Model Organism: Zea mays

AI Summary

Double mutant hybrids in the miR394‑regulated genes ZmLCR1 and ZmLCR2, created in a W22/B73 maize background, display enhanced drought tolerance through increased epicuticular wax and reduced ROS production, while maintaining normal flowering and nutrition. Under field rainfed conditions the mutants achieve significantly higher yields (greater ear weight and kernel number) compared to wild‑type hybrids.

drought tolerance miR394 ZmLCR1 ZmLCR2 epicuticular wax

Drought-associated genes exhibit high constitutive expression in Quercus douglasii, a drought tolerant California oak

Authors: Steele, S., Peck, L. D., Sork, V. L.

Date: 2025-07-08 · Version: 1
DOI: 10.1101/2025.07.07.663554

Category: Plant Biology

Model Organism: Quercus douglasii

AI Summary

The study used RNA-Seq to examine transcriptional responses to dehydration in seedlings of the drought‑tolerant oak Quercus douglasii, comparing dry‑down and well‑watered treatments. Few genes were differentially expressed, but many drought‑responsive genes showed high constitutive expression, indicating that Q. douglasii relies on a combination of constitutive expression and limited plasticity to tolerate drought.

drought tolerance constitutive gene expression plasticity RNA-Seq Quercus douglasii

Secretory carrier membrane proteins assist with aquaporin trafficking in Arabidopsis.

Authors: Jiang, Q., Vandorpe, M., fox, a. R., Vermeersch, M., Mylle, E., Cuadrado, A. F., Kraus, J., Liu, H., Eeckhout, D., Navarre, C., Courtoy, A., Jacobs, T. B., Dragwidge, J. M., De Smet, I., Pleskot, R., Chaumont, F., Van Damme, D.

Date: 2025-07-06 · Version: 1
DOI: 10.1101/2025.07.03.662988

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study investigated the five Arabidopsis SCAMP proteins, focusing on SCAMP5, and identified conserved tyrosine and NPF motifs that mediate anterograde transport and endocytosis, respectively. SCAMPs were shown to dimerize at the plasma membrane and endosomes, interact with plasma‑membrane aquaporins, and their loss (triple and quintuple mutants) conferred mild developmental delay but increased drought tolerance, likely via altered PIP trafficking or stability.

SCAMP proteins Arabidopsis thaliana aquaporins (PIPs) drought tolerance protein trafficking

Tomato leaf transcriptomic changes promoted by long-term water scarcity stress can be largely prevented by a fungal-based biostimulant

Authors: Lopez-Serrano, L., Ferez-Gomez, A., Romero-Aranda, R., Jaime Fernandez, E., Leal Lopez, J., Fernandez Baroja, E., Almagro, G., Dolezal, K., Novak, O., Diaz, L., Bautista, R., Leon Morcillo, R. J., Pozueta Romero, J.

Date: 2025-06-28 · Version: 1
DOI: 10.1101/2025.06.26.661737

Category: Plant Biology

Model Organism: Solanum lycopersicum

AI Summary

Foliar application of Trichoderma harzianum cell‑free culture filtrates (CF) increased fruit yield, root growth, and photosynthesis in a commercial tomato cultivar under prolonged water deficit in a Mediterranean greenhouse. Integrated physiological, metabolite, and transcriptomic analyses revealed that CF mitigated drought‑induced changes, suppressing about half of water‑stress responsive genes, thereby reducing the plant’s transcriptional sensitivity to water scarcity.

water deficit Trichoderma harzianum culture filtrate tomato drought tolerance transcriptome
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