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AI-summarized plant biology research papers from bioRxiv

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The Rapid Mechanically Activated (RMA) channel transduces increases in plasma membrane tension into transient calcium influx

Authors: Guerringue, Y., Thomine, S., Allain, J.-M., Frachisse, J.-M.

Date: 2025-08-07 · Version: 1
DOI: 10.1101/2025.08.06.668926

Category: Plant Biology

Model Organism: General

AI Summary

The study characterizes a plasma membrane-localized, calcium‑permeable force‑gated channel named Rapid Mechanically Activated (RMA) in plants, using patch‑clamp and pressure‑clamp to elucidate its rapid activation, inactivation, and irreversible adaptation upon repeated mechanical stimulation. Kinetic modeling shows the channel functions as a pass‑band filter for frequencies between 10 Hz and 1 kHz, supporting its role in transducing high‑frequency mechano‑stimuli such as insect vibrations.

mechanically activated calcium channel RMA channel calcium signaling high‑frequency mechanical stimulation kinetic modeling

Cell-type specific gating of gene regulatory modules as a hallmark of early immune responses in Arabidopsis leaves

Authors: Wang, S., Bezrukov, I., Wu, P.-J., Gauss, H., Timmermans, M., Weigel, D.

Date: 2025-08-01 · Version: 1
DOI: 10.1101/2025.08.01.668105

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study used single‑cell transcriptomics to compare Arabidopsis thaliana leaf cell responses during pattern‑triggered and effector‑triggered immunity, revealing that core defense modules are broadly shared but differ in timing, intensity, and cell‑type specific receptor dynamics. Distinct mesophyll subpopulations showed divergent resilience patterns, and gene regulatory network analysis identified WRKY‑regulated and salicylic‑acid biosynthesis modules, with the cue1-6 mutant confirming robustness of core immune responses while exposing cryptic sucrose‑responsive pathways.

single-cell RNA sequencing Arabidopsis thaliana plant immunity PTI and ETI WRKY transcription factors

A copper-dependent, redox-based hydrogen peroxide perception in plants

Authors: Ishihama, N., Fukuda, Y., Shirano, Y., Takizawa, K., Hiroyama, R., Fujimoto, K. J., Ito, H., Nishimura, M., Yanai, T., Inoue, T., Shirasu, K., Laohavisit, A.

Date: 2025-07-25 · Version: 1
DOI: 10.1101/2025.07.22.666036

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study resolves the ectodomain structure of the plant-specific LRR‑RLK CARD1 (HPCA1) and reveals a surface‑exposed copper ion coordinated by histidines that is essential for hydrogen peroxide signaling. Combined structural, genetic, and biochemical analyses show that previously identified cysteine residues are not required for signal perception, establishing CARD1 as the first copper‑dependent redox receptor.

quinone signaling reactive oxygen species LRR‑RLK copper‑dependent receptor hydrogen peroxide signaling

A conserved small RNA-generating gene cluster undergoes sequence diversification and contributes to plant immunity

Authors: Feng, L., Hou, Y., Toghani, A., Wang, Z., Tang, B., Atkinson, N., Li, H., Qiao, Y., Wang, Y., Hua, J., Zhai, J., Ma, W.

Date: 2025-07-21 · Version: 1
DOI: 10.1101/2025.07.20.665670

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reveals that a conserved clade of pentatricopeptide repeat (PPR) genes in Arabidopsis thaliana generates secondary siRNAs that contribute to plant immunity, with these PPR loci undergoing extensive duplication and diversification to create a varied siRNA pool for pathogen defense. This PPR‑siRNA system is proposed as a novel family of defense genes with potential for engineering broad‑spectrum disease resistance.

secondary siRNA pentatricopete repeat proteins plant immunity gene duplication co‑evolutionary arms race

The secreted redox sensor roGFP2-Orp1 reveals oxidative dynamics in the plant apoplast

Authors: Ingelfinger, J., Zander, L., Seitz, P. L., Trentmann, O., Tiedemann, S., Sprunck, S., Dresselhaus, T., Meyer, A. J., Müller-Schüssele, S. J.

Date: 2025-07-09 · Version: 2
DOI: 10.1101/2025.01.10.632316

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study evaluated the genetically encoded redox biosensor roGFP2-Orp1 for monitoring extracellular redox dynamics in diverse land plants, revealing that re‑oxidation rates in the apoplast differ between Physcomitrium patens and Arabidopsis thaliana and are accelerated by immune activation. Comparisons across tip‑growing cells showed no intracellular redox gradient but a partially reduced extracellular sensor in Nicotiana tabacum pollen tubes, indicating species‑ and cell‑type‑specific oxidative processes.

reactive oxygen species apoplastic redox dynamics roGFP2-Orp1 biosensor immune signaling plant model species

A hierarchical abscission program regulates reproductive allocation in Prunus yedoensis and Prunus sargentii

Authors: Jeon, W.-T., Kim, J.-A., Cheon, A., Lee, S. S. Y., Kang, J., Lee, J.-M., Lee, Y.

Date: 2025-07-08 · Version: 1
DOI: 10.1101/2025.07.08.663657

Category: Plant Biology

Model Organism: Prunus yedoensis, Prunus sargentii

AI Summary

The study examined five sequential organ abscission events in two cherry species, revealing that some abscission zones form de novo while others are pre‑formed and reactivated by localized ethylene signaling, leading to cell division, lignification, ROS accumulation, and pH changes. Species‑specific differences were found in petal shedding and a post‑fertilization checkpoint that eliminates small fruits, indicating a hierarchical, multilayered reproductive filter controlling fruit set.

organ abscission abscission zone ethylene signaling reactive oxygen species Prunus reproductive biology

Single-cell-resolved calcium and organelle dynamics in resistosome-mediated cell death

Authors: Chen, Y.-F., Lin, K.-Y., Huang, C.-Y., Hou, L.-Y., Yuen, E. L. H., Sun, W.-C. J., Chiang, B.-J., Chang, C.-W., Wang, H.-Y., Bozkurt, T. O., Wu, C.-H.

Date: 2025-07-01 · Version: 1
DOI: 10.1101/2025.06.27.662017

Category: Plant Biology

Model Organism: Multi-species

AI Summary

The study visualizes subcellular dynamics following activation of the NRC4 resistosome, showing that NRC4 enrichment at the plasma membrane triggers calcium influx, followed by sequential disruption of mitochondria, plastids, endoplasmic reticulum, and cytoskeleton, culminating in plasma membrane rupture and cell death. These observations define a temporally ordered cascade of organelle and membrane events that execute plant immune cell death.

NLR resistosome calcium signaling organelle disruption cell death cascade plant immunity

Papaver S-determinants trigger an integrated network of mitochondrially derived ROS and disruption of energy metabolism in incompatible pollen tubes

Authors: Wang, L., Hsiao, A.-S., Carli, J., Raza, A., Lin, Z., Arnaud, D., Davies, J., Franklin-Tong, V. E., Smirnoff, N., Bosch, M.

Date: 2025-06-27 · Version: 1
DOI: 10.1101/2025.06.26.661469

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study reconstitutes Papaver rhoeas self‑incompatibility (SI) in Arabidopsis thaliana by expressing the pollen S‑determinant PrpS, revealing that SI triggers a rapid Ca2+‑dependent signaling cascade that leads to mitochondrial H2O2 production, metabolic collapse, and programmed cell death. Using a genetically encoded H2O2 sensor and metabolic assays, the authors show that early mitochondrial disruption, driven by altered Ca2+, cytosolic pH, and distinct ROS sources, is central to the SI response.

self-incompatibility reactive oxygen species mitochondrial disruption Ca2+ signaling Arabidopsis thaliana

The CATION CALCIUM EXCHANGER 4 (CCX4) regulates LRX1-related root hair development through Ca2+ homeostasis

Authors: Hou, X., Tortora, G., Herger, A., Buratti, S., Dobrev, P. I., Vaculikov, R., Lacek, J., Sotiropoulos, A. G., Kadler, G., Schaufelberger, M., Candeo, A., Bassi, A., Wicker, T., Costa, A., Ringli, C.

Date: 2025-06-27 · Version: 1
DOI: 10.1101/2025.06.25.660713

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study identified a suppressor mutation (sune42) in the Golgi-localized Ca2+ transporter CCX4 that alleviates the dominant‑negative root hair phenotype caused by the extensin‑less LRX1ΔE14 protein in Arabidopsis. Detailed Ca2+ imaging showed that LRX1ΔE14 disrupts tip‑focused cytoplasmic Ca2+ oscillations, a defect rescued by the sune42 mutation, highlighting the role of Golgi‑mediated Ca2+ homeostasis in root hair growth.

calcium signaling root hair development LRX1 extensin domain CCX4 Golgi transporter Ca2+ homeostasis

Non-Thermal Plasma Activated Water is an Effective Nitrogen Fertilizer Alternative for Arabidopsis thaliana

Authors: Kizer, J. J., Robinson, C. D., Lucas, T., Shannon, S., Hernandez, R., Stapelmann, K., Rojas-Pierce, M.

Date: 2025-06-17 · Version: 1
DOI: 10.1101/2025.06.12.659237

Category: Plant Biology

Model Organism: Arabidopsis thaliana

AI Summary

The study compared two plasma‑activated water (PAW) solutions with different H₂O₂ levels, produced by a radio‑frequency glow discharge, on Arabidopsis thaliana growth and stress responses. PAW lacking detectable H₂O₂ promoted seedling growth and induced nitrogen‑assimilation genes, while H₂O₂‑containing PAW did not affect growth but enhanced root performance under heat stress; mature plants fertilized with H₂O₂‑free PAW performed comparably to nitrate controls. These results indicate PAW can replace NO₃⁻ fertilizers provided H₂O₂ levels are carefully managed.

plasma activated water hydrogen peroxide reactive oxygen species nitrogen uptake heat stress
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